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Acknowledgements
Sequence Read Archive SARS-CoV-2 Wastewater Submissions
Last Updated: 2025-06-25
Study Title Submission Metadata Dates Submissions Per Month Since Jan 2020
Total Submissions Sequencing File Sizes Total Bases Sequenced Earliest Submission Most Recent Submission
Wastewater monitoring for SARS-CoV-2 across the United States (CDC/NWSS/Biobot Analytics) 22969 18.5 TB 48T 2022-05-03 2023-09-15
248000000000000000000000000000002914715622312619523522824722024820423918218421780000000000000000000000
Surveillance of SARS-CoV-2 genomic variants in wastewater in Switzerland 8621 5.5 TB 23T 2020-07-09 2024-11-04
387000000035511274281552111811841861911951882012152111881842071932031841481861871501831903872162372262292252133022983142942981121151281061392768810879160000000
SARS-CoV-2 wastewater surveillance (Verily Life Sciences) 11298 2.8 TB 12T 2021-11-29 2025-06-19
5040000000000000000000000097293105168132117117125119114114128139329316440448504503317195320384350314272314324347336317331326318338249202331296274143173163
South Florida - Rapid Acceleration of Diagnostics: Development and Proof-of-Concept Implementation of the South Florida Miami RADx-rad 2128 4.6 TB 9T 2020-09-30 2022-12-20
23500000000012213235566797103888311113790591101152351471718150453933207813000000000000000000000000000000
Biobot Analytics Wastewater Monitoring 4190 3.8 TB 9T 2021-11-17 2022-10-05
350000000000000000000000063235312416181216127300000000000000000000000000000000
OHA/OSU wastewater project 4048 2.4 TB 7T 2002-04-12 2025-06-23
235000000000000000000000000000200733810218823522317693158197118233204991851911277781877233231967128134129120444110092322067
US National Wastewater Surveillance System (NWSS) wastewater project: Illinois Wastewater Surveillance System (IWSS) 12241 2.3 TB 7T 2021-12-01 2024-11-26
665000000000000000000000000110244403286422490564463665546416404320387352414359368335338325354412400373433329306208216196312176321181650000000
Wastewater SARS-CoV-2 surveillance at UPHL 10919 1.9 TB 5T 2021-09-23 2025-06-24
344000000000000000000000645717821421620624623329729824929324523223022616222529225029630520134422426921813726730925930520326623730123930268207242239207257199161
Wastewater monitoring of COVID in UK 23536 916.6 GB 5T 2021-10-01 2022-03-12
4.80K00000000000000000000004.07K4.72K3.98K4.80K4.61K1.36K000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Ohio Department of Health/The Ohio State University Applied Microbiology Services Laboratory 9224 1.6 TB 4T 2021-12-19 2024-12-23
371000000000000000000000000821888364167257219190279278309268279317276272309238215237276277361285275371297341246192142276283363286213213000000
WW_seq_SARS-CoV-2_SLO 614 1.4 TB 3T 2021-02-04 2023-01-31
660000000000000014433240464450664050432001212121212181260121800000000000000000000000000000
Amplicon based sequencing of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) isolated from 16 wastewater catchments in Jefferson County, Kentucky USA over a multi-week period 1040 1.5 TB 3T 2019-10-11 2022-07-18
85000000000000007636785686885686885348565643240312400000000000000000000000000000000000
Wastewater SARS-CoV-2 Sequencing 3419 1 TB 3T 2020-07-23 2022-02-09
3780000000319102425561242472082752972381972592142152602673781030000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance System (PaWSS) SARS-CoV-2 Monitoring (Biobot Analytics) 1168 1 TB 2T 2023-01-09 2023-02-07
20000000000000000000000000000000000000120000000000000000000000000000
SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads 15043 747.9 GB 2T 2021-03-08 2025-06-16
5650000000000000007240100160151165150144128137229231380361391436357439484511358467555501565484549485400476419469366383463465403450376100002319323121012816114398
Wastewater monitoring for SARS-CoV-2 across the United States (HHS Protect/NWSS/Biobot Analytics) 3188 495.8 GB 1T 2021-06-07 2021-08-19
11100000000000000000026721110000000000000000000000000000000000000000000000
Wastewater Surveillance for COVID-19 (AquaVitas/NWSS) 1280 624.7 GB 1T 2019-10-23 2021-06-18
6020323295145293923251316023040006000000000000000000000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from MO wastewater 12642 309.5 GB 1T 2021-01-06 2025-06-21
399000000000000011432573042623953163782552432902003051621331442942623063992882133082042243142842982631312623212612722472013032602352231481622672802772371731462131841001184442
Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater 576 402.9 GB 1T 2022-01-08 2022-12-31
600000000000000000000000000474848604848604843453645000000000000000000000000000000
pathogen wastewater surveillance (Verily Life Sciences/NWSS) 426 289.9 GB 908B 2025-06-06 2025-06-19
426000000000000000000000000000000000000000000000000000000000000000000426
SARS-CoV-2 Wastewater Surveillance in Southern Nevada 1385 201.4 GB 780B 2025-06-12 2025-06-12
1.38K0000000000000000000000000000000000000000000000000000000000000000001.38K
SARS-CoV-2 wastewater surveillance, Denmark 2021-2023 5348 450.2 GB 672B 2021-10-26 2023-01-24
67100000000000000000000009957853949554867137023633123020217720228123315600000000000000000000000000000
Sequencing of SARS-CoV-2 in Wastewater-Washoe County 161 289 GB 617B 2020-11-20 2021-06-20
10000000000010101001000000000000000000000000000000000000000000000000
Optimised protocol for monitoring SARS-CoV-2 in wastewater using RC-PCR 1458 184.5 GB 607B 2021-06-10 2022-03-26
1.13K0000000000000000001480000007701.13K000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Georgia Public Health Laboratory 725 270.4 GB 560B 2023-02-28 2024-06-17
23000000000000000000000000000000000000001161341072241323232201810000000000000
CDC NWSS - SARS-CoV-2 Wastewater Sequencing 2211 207 GB 497B 2014-08-01 2025-06-18
12900000000000000000000000000000000001329474254613453474764695678991071171096398101119129113842328775315243982
SARS-CoV-2 wastewater surveillance in Arkansas Metagenome 269 262.9 GB 492B 2020-12-28 2024-04-16
12000000000000184030657071289788884777128847888487988488800000000000000
Wisconsin wastewater project: Wisconsin State Laboratory of Hygiene 2914 216.5 GB 478B 2022-01-10 2025-06-23
13600000000000000000000000009233128164763415675728180737566513028577595120112136839141484612211512011460991211178026039
Wastewater study of severe acute respiratory syndrome coronavirus 2 in Newport Oregon 116 234.6 GB 464B 2020-06-10 2020-12-09
52000000523949273000000000000000000000000000000000000000000000000000000
SARS-CoV-2 surveillance from North Carolina wastewater 1809 423.7 GB 458B 2022-08-03 2023-07-06
18900000000000000000000000000000000165179174159162128172184157189138200000000000000000000000
Implementation of Genomic Wastewater Based Biosurveillance for all Communicable Infectious Diseases 111 230.3 GB 442B 2021-12-05 2022-01-09
73000000000000000000000000733800000000000000000000000000000000000000000
SARS-CoV-2 sequencing in Slovak wastewaters 1126 133.6 GB 420B 2022-01-03 2022-08-31
208000000000000000000000000064129143138149972081980000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 1680 54.4 GB 345B 2020-11-24 2025-02-25
204000000000002091204522535283579792710412820000016413634323730263038203121333732303693436343436343528333635130000
SARS-CoV2 variant analysis in wastewater in six Swedish cities from 2021-2022 355 202.9 GB 329B 2021-11-01 2022-12-26
39000000000000000000000001128322418153024193024393823000000000000000000000000000000
Wastewater genomic sequencing for SARS-CoV-2 variants surveillance in wastewater-based epidemiology applications 76 73.2 GB 294B 2022-01-24 2022-08-14
1300000000000000000000000002137001111110000000000000000000000000000000000
Data from the Danish SARS-CoV-2 wastewater surveillance 1472 169.8 GB 294B 2023-08-08 2024-08-13
290000000000000000000000000000000000000000000002892902612401820000046109550000000000
Sars-CoV-2 WGS Sequencing from Wastewater samples from Toronto Pearson and Toronto, Ontario 1409 88.4 GB 277B 2018-01-03 2023-09-24
8200000000000000000000000004055707474797178757281638268779881088000000000000000000000
GenomeTrakr wastewater project: Nevada State Public Health Laboratory 433 107 GB 276B 2021-09-14 2022-07-16
58000000000000000000000173230304758485254432200000000000000000000000000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 652 145.5 GB 270B 2021-12-14 2022-11-29
18300000000000000000000000012183944658726553201716160000000000000000000000000000000
Virginia surveillance of SARS-CoV-2 in wastewater 1618 107 GB 254B 2023-01-01 2025-01-02
960000000000000000000000000000000000000967277687241626763627080918375523849867877542165600000
US National Wastewater Surveillance System (NWSS) wastewater project: NYC DOHMH 1622 95.2 GB 232B 2024-03-03 2025-06-10
12500000000000000000000000000000000000000000000000000011912595110125111110109847596981101158014
SARS-CoV2 variant analysis in Swedish wastewater samples collected in 2023 1138 135.9 GB 222B 2023-05-29 2023-12-25
2830000000000000000000000000000000000000000016628866206283223194000000000000000000
Sequencing of SARS-CoV-2 RNA fragments in wastewater detects the spread of new variants during major events 64 61.8 GB 210B 2021-11-12 2023-01-24
2900000000000000000000000112900001200000001200000000000000000000000000000
Targeted Amplicon and Metagenomic Sequencing from Ontario Wastewater 869 48 GB 184B 2021-10-01 2022-09-18
13200000000000000000000009477111313212412912243263018000000000000000000000000000000000
Wastewater metagenomics sequencing for the monitoring of SARS-CoV-2 dynamics in Rotterdam, the Netherlands 695 104.9 GB 181B 1905-07-13 2021-12-06
1160000000001832225330901169593715640076000000000000000000000000000000000000000000
New York State wastewater surveillance program for SARS-CoV-2: NY Department of Health Laboratory 16788 39.1 GB 179B 2022-09-11 2025-06-04
939000000000000000000000000000000000460036275616786158508257429397788606748447938096608187817186424463797126273040000057
US National Wastewater Surveillance System (NWSS) wastewater project: Delaware Public Health Lab 401 102.4 GB 174B 2023-11-29 2024-09-11
11600000000000000000000000000000000000000000000000127024116242438515946000000000
A longitudinal study of sequencing SARS-CoV-2 in wastewater samples reveal the variants prevalence 129 115.2 GB 164B 2020-07-31 2022-12-09
1400000001610035411111000214888746484087000000000000000000000000000000
A gold standard dataset for lineage abundance estimation from wastewater 252 162.5 GB 160B 2023-04-10 2023-04-27
252000000000000000000000000000000000000000025200000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune' India 1068 50.6 GB 147B 2021-11-01 2023-05-30
1390000000000000000000000036748377878525511396665398912196085480000000000000000000000000
Microbiome analysis for wastewater surveillance during COVID-19 17 68.9 GB 146B 2021-02-11 2021-04-21
60000000000000066500000000000000000000000000000000000000000000000000
Wastewater-based surveillance and molecular epidemiology of SARS-CoV-2 in northern South Africa 57 17.6 GB 134B 2021-01-18 2022-05-10
1300000000000001104771340037310150000000000000000000000000000000000000
Wastewater sequencing of SARS-CoV2 in Liverpool, UK 1341 24.2 GB 131B 2020-11-02 2021-06-21
3220000000000032218221714616510913463000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Health 440 47.7 GB 109B 2021-11-29 2022-10-21
6300000000000000000000000802154556263412847392200000000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA (RADx-rad) 994 11 GB 108B 2021-07-19 2022-09-26
10400000000000000000002386687374781046162617168548328000000000000000000000000000000000
SARS-CoV-2 Wastewater Sequencing 496 52.8 GB 104B 2020-02-29 2021-03-08
138002618610610242640404413896000000000000000000000000000000000000000000000000000
SARS-CoV-2 wastewater whole genome amplicon sequencing 184 30 GB 101B 2020-11-24 2021-10-20
9400000000000201096301420943500000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Virginia Division of Consolidated Laboratory Services 79 49.8 GB 99B 2021-11-30 2022-06-29
2200000000000000000000000122414132221000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: New Jersey Department of Health 1500 66.1 GB 98B 2024-03-27 2025-06-19
11600000000000000000000000000000000000000000000000000011109109951111071111169395115103106685764
Aircraft Wastewater Surveillance - SARS-CoV-2 Monitoring (Ginkgo Bioworks) 25 36.7 GB 96B 2022-08-04 2022-09-08
1900000000000000000000000000000000196000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance: Massachusetts State Public Health Laboratory 334 52.7 GB 93B 2023-06-13 2024-01-16
7100000000000000000000000000000000000000000040657155012583300000000000000000
SARS-CoV-2 surveillance from Wake County, North Carolina wastewater 543 34.7 GB 88B 2022-08-01 2023-06-28
58000000000000000000000000000000005847515148524654454447000000000000000000000000
CDC's Traveler-Based Genomic Surveillance Program 25 32.1 GB 87B 2025-06-06 2025-06-19
2500000000000000000000000000000000000000000000000000000000000000000025
Identifying SARS-CoV-2 VOCs in Brisbane wastewater sample 59 43.9 GB 85B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses 310 6.4 GB 84B 2021-04-06 2022-01-31
590000000000000000111154415993746261600000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Agriculture 96 45.4 GB 76B 2021-12-17 2022-06-21
21000000000000000000000000101815482120000000000000000000000000000000000000
GenomeTrakr wastewater project: Massachusetts Department of Public Health 240 24.8 GB 74B 2022-01-07 2022-03-30
1000000000000000000000000002310000000000000000000000000000000000000000
SARS-CoV-2 via wastewater Raw sequence reads 86 26.9 GB 66B 2020-11-30 2021-02-22
290000000000012928280000000000000000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance in Northern Ireland, 2021-2023 4221 26.5 GB 63B 2025-06-10 2025-06-10
4.22K0000000000000000000000000000000000000000000000000000000000000000004.22K
SARS-CoV2 amplicons from wastewater and synthetic 326 18.5 GB 60B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
Environmental samples Raw sequence reads 48 35.1 GB 59B 2020-09-23 2020-09-23
4800000000048000000000000000000000000000000000000000000000000000000000
Wastewater metagenome of buildings (RTU) 7 49.9 GB 58B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
Wastewater surveillance of open drains for SARS-CoV-2 lineages : Maharashtra State (India) during June 2022 to May 2023 556 41.5 GB 47B 2022-06-06 2023-05-23
9400000000000000000000000000000013436330698717639486450000000000000000000000000
California sewage metatranscriptomes enriched for respiratory viruses 18 27.8 GB 47B 2020-05-13 2020-07-01
90000069300000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: New Mexico State University | Food Safety Laboratory 38 16.5 GB 46B 2022-07-27 2022-11-10
1300000000000000000000000000000003139850000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from CA wastewater 192 15.9 GB 42B 2021-08-06 2022-03-02
470000000000000000000020034353547174000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance - Facility Level SARS-CoV-2 Monitoring (Ginkgo Bioworks) 12 13.3 GB 41B 2022-09-26 2023-05-31
50000000000000000000000000000000001200110520000000000000000000000000
CAGABLEA 118 41 GB 41B 2020-10-19 2021-03-23
220000000000171819222121000000000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 60 15.3 GB 38B 2022-01-17 2022-07-18
11000000000000000000000000069119911500000000000000000000000000000000000
Wisconsin wastewater lineage 271 16.4 GB 37B 2022-01-02 2023-03-09
48000000000000000000000000011214827142034171998209113000000000000000000000000000
Assessing multiplex tiling PCR sequencing approaches for detecting genomic variants of SARS-CoV-2 in municipal wastewater 106 33.6 GB 36B 2021-02-07 2021-05-14
460000000000000010454650000000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: NH Public Health Laboratories 417 11.4 GB 35B 2020-12-01 2025-06-16
36700000000000012000000000000000000000000000000000000000000000038000000367
Coronavar, sequencing Luxembourg wastewater samples 233 21.7 GB 33B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
Effective Inhibitor Removal from Wastewater Samples Increases Sensitivity of RT-dPCR and Sequencing Analyses and Enhances the Stability of Wastewater-Based Surveillance 36 13.6 GB 32B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
Wastewater sequencing for SARS-CoV-2 59 11.8 GB 31B 2021-01-01 2021-04-27
1600000000000001614151400000000000000000000000000000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune, India (December' 2023 to April'2024) 534 28.7 GB 31B 2023-12-01 2024-04-15
161000000000000000000000000000000000000000000000000128161118804700000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 77 13.4 GB 30B 2022-01-16 2022-07-13
2700000000000000000000000001311382711400000000000000000000000000000000000
Validation study of covid sequencing from wastewater 150 5.7 GB 27B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
A pan-European study of SARS-CoV-2 variants in wastewater under the EU Sewage Sentinel System 54 17.7 GB 27B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
NYC Wastewater Raw Sequence Reads 311 7.9 GB 27B 2021-01-31 2022-03-21
460000000000000121518425942923334616282110000000000000000000000000000000000000000
GenomeTrakr wastewater project: TGen North 229 13.3 GB 25B 2021-10-04 2023-03-23
490000000000000000000000304928482400001820127587000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA 92 13.8 GB 24B 2020-04-07 2020-06-16
430000124336000000000000000000000000000000000000000000000000000000000000
Monitoring SARS-CoV-2 in Houston wastewater 256 14.1 GB 24B 2021-04-19 2021-11-29
38000000000000000038000000380000000000000000000000000000000000000000000
Genome Trakr wastewater project: NJDA 121 7.7 GB 24B 2022-01-11 2022-07-15
2100000000000000000000000001921191414191500000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in on-campus STP : INDIA 191 14.9 GB 23B 2021-11-08 2024-04-25
2200000000000000000000000479864154453210585653133781020222200000000000000
"SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater a longitudinal study in Bengaluru, India" 303 4.6 GB 21B 2022-01-03 2022-06-27
1260000000000000000000000000126529183464000000000000000000000000000000000000
GenomeTrakr wastewater project: SC DHEC PHL 43 6.9 GB 21B 2023-02-14 2023-03-28
24000000000000000000000000000000000000001924000000000000000000000000000
Sequencing of SARS-CoV-2 RNA from wastewater influent samples collected in Pennsylvania for genomic surveillance 97 7.6 GB 20B 2023-06-01 2023-10-17
550000000000000000000000000000000000000000008120225500000000000000000000
GenomeTrakr Wastewater Project: Thakur Molecular Epidemiology Laboratory, NC State University 48 10 GB 19B 2022-04-04 2023-06-05
90000000000000000000000000000472011200756391000000000000000000000000
Berlin Wastewater Raw Sequence Reads, SARS-CoV-2 amplicon sequencing 62 10.6 GB 18B 2021-02-09 2022-01-13
13000000000000007131074004446300000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Raw sequence reads 192 1.1 GB 18B 2022-09-22 2023-10-19
860000000000000000000000000000000003000250040647863900000000000000000000
GenomeTrakr wastewater project: Penn State 25 7.8 GB 17B 2022-01-10 2022-06-16
80000000000000000000000000840544000000000000000000000000000000000000
Metagenomics analysis of wastewater influents from wastewater treatment facilities across Ontario 48 7.6 GB 17B 2021-11-29 2022-02-09
26000000000000000000000001182630000000000000000000000000000000000000000
Wastewater surveillance of SARS-CoV-2 in Victoria, Australia 411 2.8 GB 16B 2021-11-15 2021-12-21
25200000000000000000000000159252000000000000000000000000000000000000000000
Wastewater Surveillance 17 4.6 GB 15B 2020-11-02 2021-01-25
70000000000076400000000000000000000000000000000000000000000000000000
Wastewater ARCTIC SARS-Cov-2 sequencing 5 6.3 GB 14B 2020-12-28 2021-01-17
40000000000001400000000000000000000000000000000000000000000000000000
Pilot sequencing study for wastewater monitoring for SARS-CoV-2 (Biobot Analytics/Ginkgo Bioworks) 30 6.2 GB 14B 2020-12-27 2021-01-19
2200000000000082200000000000000000000000000000000000000000000000000000
Improved Robustness of SARS-CoV-2 Whole-Genome Sequencing from Wastewater with a Nonselective Virus Concentration Method 94 3.5 GB 13B 2021-10-01 2022-04-12
200000000000000000000000181112121320800000000000000000000000000000000000000
Data from SARS-CoV-2 wastewater surveillance of aircraft from China to Denmark 6 7.6 GB 11B 2023-01-12 2023-02-10
40000000000000000000000000000000000000420000000000000000000000000000
Raw sequence reads obtained from NGS of wastewater samples 79 2.7 GB 10B 2022-08-01 2022-09-29
41000000000000000000000000000000003841000000000000000000000000000000000
Detection of SARS-CoV-2 with VirCapSeq capture on wastewater metagenomic samples 6 5 GB 10B 2020-03-15 2020-07-14
50005000100000000000000000000000000000000000000000000000000000000000
Targeted amplicon sequencing of wastewater samples for detecting SARS-CoV-2 variants with high sensitivity and resolution 79 1.8 GB 10B 2021-01-27 2022-02-25
60000000000000110001244002640000000000000000000000000000000000000000
Detection of SARS-CoV-2 variants and their proportions in wastewater samples by next-generation sequencing in Finland 15 1.9 GB 8B 2021-11-08 2022-02-21
50000000000000000000000043530000000000000000000000000000000000000000
Danish SARS-CoV-2 wastewater surveillance - pilot 29 5 GB 8B 2023-06-13 2023-06-13
2900000000000000000000000000000000000000000029000000000000000000000000
Wastewater Project: Rhode Island Department of Health 60 2.4 GB 8B 2022-12-07 2025-02-13
90000000000000000000000000000000000009050023205305730000000005740000
US National Wastewater Surveillance System (NWSS) wastewater project: Florida Department of Health 22 2.2 GB 8B 2023-12-31 2024-02-20
11000000000000000000000000000000000000000000000000111100000000000000000
The Impact of Viral Concentration Method on Quantification and Long Amplicon Nanopore Sequencing of SARS-CoV-2 and Noroviruses in Wastewater 63 6.5 GB 8B 2021-11-12 2021-11-14
6000000000000000000000000600000000000000000000000000000000000000000000
Early Detection of SARS-CoV-2 Variants Using Genomic Surveillance: Insights from Aircraft Wastewater and Nasal Swabs at Kigali International Airport, Rwanda 59 7.2 GB 7B 2023-08-31 2024-05-31
21000000000000000000000000000000000000000000001327021153250000000000000
Norovirus genotyping in Sydney wastewater 2018-2020 108 3.2 GB 7B 2018-01-01 2020-12-01
30333333333333000000000000000000000000000000000000000000000000000000
ES SARS-CoV-2 Malawi 175 678.8 MB 7B 2020-11-30 2022-04-12
310000000000011724321131912642422219600000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance in Shenzhen during the transition from "dynamic COVID-zero" to "opening up" policy 43 1.7 GB 7B 2022-09-22 2023-01-17
20000000000000000000000000000000000600201700000000000000000000000000000
Genome sequencing of SARS-CoV-2 in wastewater confirm early arrival of omicron at Frankfurt airport but limited spread in Frankfurt city wastewater during November 2021 4 4.8 GB 7B 2021-11-04 2021-11-23
40000000000000000000000040000000000000000000000000000000000000000000
Coronastep, sequencing Luxembourg wastewater samples 97 2.9 GB 6B 2020-03-30 2021-03-04
400002200320124018585000000000000000000000000000000000000000000000000000
WISER_Mock_Community_Data 120 2.7 GB 6B 2022-02-14 2022-03-15
60000000000000000000000000006060000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing of wastewater in Oregon 5 3 GB 6B 2021-03-26 2021-04-04
30000000000000002300000000000000000000000000000000000000000000000000
SARS-CoV-2 sequencing data, generated at INAB-CERTH, and retrieved from wastewater samples 23 3.6 GB 6B 2020-05-10 2021-06-28
50000010000001035445000000000000000000000000000000000000000000000000
Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK 340 2.5 GB 6B 2020-03-30 2020-05-12
19200048192960000000000000000000000000000000000000000000000000000000000000
RBD amplicon sequencing data of SARS-CoV-2 in wastewater 217 3.6 GB 6B 2022-03-16 2023-08-08
1500000000000000000000000000041212151215121512121512121215121260000000000000000000000
GenomeTrakr wastewater project: New Jersey Department of Health - Public Health and Environmental Laboratories 54 2 GB 5B 2022-01-18 2022-07-14
16000000000000000000000000050671216800000000000000000000000000000000000
Diagnostic Microbiology & Infectious Disease Rapid and sensitive detection of Sars-CoV-2 variants in nasopharyngeal swabs and wastewaters 6 2.4 GB 4B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance of pooled aircraft and airport samples from Denmark 10 2.8 GB 4B 2023-01-02 2023-02-01
80000000000000000000000000000000000000820000000000000000000000000000
Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa, a highly diverged BA.2-related lineage 29 993.4 MB 4B 2025-06-20 2025-06-20
2900000000000000000000000000000000000000000000000000000000000000000029
Metagenomic monitoring of SARS-CoV-2 in effluents in Rio de Janeiro. 18 2.4 GB 4B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
Long Amplicon Nanopore Sequencing for Dual-Typing RdRp and VP1 Genes of Norovirus Genogroups I and II in Wastewater 23 3.1 GB 4B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
UTK SARS-CoV-2 Wastewater Surveillance 1 1.3 GB 4B 2020-10-12 2020-10-12
10000000000100000000000000000000000000000000000000000000000000000000
Olivar wastewater samples 32 938.7 MB 4B 2022-08-08 2022-08-15
1600000000000000000000000000000000160000000000000000000000000000000000
GenomeTrakr wastewater project: Data of Limited Quality 10 1.5 GB 3B 2021-11-30 2021-12-21
60000000000000000000000064000000000000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in Pune city 6 3.5 GB 3B 2021-03-10 2021-03-30
50000000000000005000000000000000000000000000000000000000000000000000
Chronic Shedding of a SARS-CoV-2 Alpha Variant Lineage Q.3/Q.4 in Wastewater 17 978.9 MB 3B 2021-09-21 2023-05-15
30000000000000000000001110101101001000022320000000000000000000000000
SARS-CoV-2 wastewater genome sequencing for SASEA 49 155.1 MB 3B 2020-12-02 2021-06-23
23000000000000102381511000000000000000000000000000000000000000000000000
First seen in local wastewater – Novel virus variants observed weeks prior to routine surveillance underscore the potential of wastewater-based epidemiology 53 1.7 GB 3B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Texas Department of State Health Services 12 1.2 GB 2B 2022-01-11 2022-08-02
50000000000000000000000000500123010000000000000000000000000000000000
Wastewater-based Surveillance in Selangor Malaysia 5 2.3 GB 2B 2023-04-10 2024-04-05
30000000000000000000000000000000000000000300000000000200000000000000
SARS-CoV-2 sequencing upon wastewater filtration 12 1.2 GB 2B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
COVID-19 Environmental Surveillance in Karachi, Pakistan: Genome sequencing and assembly 115 1.2 GB 2B 2021-01-07 2022-01-20
25000000000000030010712171488252000000000000000000000000000000000000000000
Wastewater SARS-CoV-2 testing at SHL 163 641.1 MB 2B 2023-08-21 2025-06-06
200000000000000000000000000000000000000000000026131413151021035137101320118411
SARS-CoV-2 Wastewater Surveillance in Norway 2022-2023 8 1 GB 2B 2023-03-27 2023-04-10
40000000000000000000000000000000000000004400000000000000000000000000
Nanopore sequencing of SARS-CoV-2 VOC B.1.1.7 from Canadian wastewater using tiled amplicons 2 857.5 MB 1B 2021-01-26 2021-01-26
20000000000000200000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: ADRDL South Dakota 13 701.1 MB 1B 2022-05-12 2023-04-26
30000000000000000000000000000012111130020100000000000000000000000000
Tracking SARS-CoV-2 variants in wastewater in San Pedro de la Paz, Chile 9 703.3 MB 1B None None
5-5000000000000000000000000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Philadelphia Public Health Laboratory 312 571.9 MB 1B 2024-06-26 2025-06-05
6000000000000000000000000000000000000000000000000000000020363636041260562020012
US National Wastewater Surveillance System (NWSS) wastewater project: Pennsylvania Bureau of Labs 2 817.6 MB 1B 2023-07-03 2023-07-05
20000000000000000000000000000000000000000000200000000000000000000000
Metatranscriptomics reveals SARS-CoV-2 mutations present in wastewater of the Frankfurt metropolitan area in Southern Germany 3 713.4 MB 821M 2020-03-04 2020-03-04
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Genomic surveillance of SARS-CoV-2 in wastewater in Gujarat, India 4 429.8 MB 748M 2020-10-22 2021-02-08
20000000000110020000000000000000000000000000000000000000000000000000
Wastewater2021 9 301.2 MB 744M None None
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SARS-CoV-2 WGS from MO Wastewater Raw sequence reads 1 311.6 MB 622M 2021-05-03 2021-05-03
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SARS-CoV-2 on Environmental Surface 15 378.7 MB 378M 2022-03-04 2022-10-14
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Community-level SARS-CoV-2 sequence diversity revealed by wastewater sampling 30 182.5 MB 225M 2020-06-28 2021-01-31
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SARS-CoV-2 sequencing of university campus wastewater and wastewater treatment plant influent 19 136.2 MB 167M 2020-07-19 2020-09-30
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ONT Sequencing for SARS-CoV-2 in KAUST wastewater 36 114.9 MB 131M 2020-08-12 2022-09-25
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Chlorine disinfectant significantly changed microfauna habitat, community structure, and colonization mode in wastewater treatment plants during the COVID-19 pandemic 2 15.4 MB 79M None None
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SARS-CoV-2 Whole-Genome Sequencing from Hospital Wastewater 167 0 B 0 2021-05-05 2023-09-27
220000000000000000074466011016554197303711132262000123000000000000000000000
SARS-CoV-2 genome sequencing across Autosampler, COSCa-ball and Torpedo samplers 75 0 B 0 2023-03-14 2023-05-04
27000000000000000000000000000000000000000272160000000000000000000000000
16S analysis of university dormitory raw wastewater samples, collected during the COVID-19 Pandemic. 173 0 B 0 None None
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SARS-CoV-2 genome sequencing in influent wastewater and primary sludge 80 0 B 0 2022-04-02 2023-12-17
230000000000000000000000000000230000000000000000182416000000000000000000
SARS-CoV-2 Wastewater-based Genomic Epidemiology (WGE) in Japan 21 0 B 0 2023-02-01 2023-11-15
30000000000000000000000000000000000000023232123210000000000000000000
High-resolution and real-time wastewater viral surveillance by Nanopore sequencing 28 0 B 0 2022-10-02 2023-04-16
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Evaluation of sampling methods for genomic surveillance of SARS-CoV-2 variants in aircraft wastewater samples 85 0 B 0 2022-11-03 2023-01-11
380000000000000000000000000000000000038331400000000000000000000000000000
Reverse-transcription loop-mediated isothermal amplification and nanopore sequencing (LAMPore) for SARS-CoV-2 wastewater-based surveillance 77 0 B 0 2020-12-22 2020-12-22
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