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Acknowledgements
Sequence Read Archive SARS-CoV-2 Wastewater Submissions
Last Updated: 2025-08-27
Study Title Submission Metadata Dates Submissions Per Month Since Jan 2020
Total Submissions Sequencing File Sizes Total Bases Sequenced Earliest Submission Most Recent Submission
Wastewater monitoring for SARS-CoV-2 across the United States (CDC/NWSS/Biobot Analytics) 22969 18.5 TB 48T 2022-05-03 2023-09-15
248000000000000000000000000000002914715622312619523522824722024820423918218421780000000000000000000000000000
Surveillance of SARS-CoV-2 genomic variants in wastewater in Switzerland 8621 5.5 TB 23T 2020-07-09 2024-11-04
387000000035511274281552111811841861911951882012152111881842071932031841481861871501831903872162372262292252133022983142942981121151281061392768810879160000000000000
SARS-CoV-2 wastewater surveillance (Verily Life Sciences) 11805 3 TB 12T 2021-11-29 2025-08-22
50400000000000000000000000972931051681321171171251191141141281393293164404485045033171953203843503142723143243473363173313263183382492023312962741432301471711800000
South Florida - Rapid Acceleration of Diagnostics: Development and Proof-of-Concept Implementation of the South Florida Miami RADx-rad 2128 4.6 TB 9T 2020-09-30 2022-12-20
23500000000012213235566797103888311113790591101152351471718150453933207813000000000000000000000000000000000000
Biobot Analytics Wastewater Monitoring 4190 3.8 TB 9T 2021-11-17 2022-10-05
350000000000000000000000063235312416181216127300000000000000000000000000000000000000
OHA/OSU wastewater project 4185 2.4 TB 7T 2002-04-12 2025-08-23
235000000000000000000000000000200733810218823522317693158197118233204991851911277781877233231967128134129120444110092322148044930000
US National Wastewater Surveillance System (NWSS) wastewater project: Illinois Wastewater Surveillance System (IWSS) 12244 2.3 TB 7T 2021-12-01 2025-08-01
665000000000000000000000000110244403286422490564463665546416404320387352414359368335338325354412400373433329306208216196312176321181650000000030000
Wastewater SARS-CoV-2 surveillance at UPHL 11381 1.9 TB 5T 2021-09-23 2025-08-26
3440000000000000000000006457178214216206246233297298249293245232230226162225292250296305201344224269218137267309259305203266237301239302682072422392072572660642990000
Wastewater monitoring of COVID in UK 23536 916.6 GB 5T 2021-10-01 2022-03-12
4.80K00000000000000000000004.07K4.72K3.98K4.80K4.61K1.36K000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Ohio Department of Health/The Ohio State University Applied Microbiology Services Laboratory 9224 1.6 TB 4T 2021-12-19 2024-12-23
371000000000000000000000000821888364167257219190279278309268279317276272309238215237276277361285275371297341246192142276283363286213213000000000000
WW_seq_SARS-CoV-2_SLO 614 1.4 TB 3T 2021-02-04 2023-01-31
660000000000000014433240464450664050432001212121212181260121800000000000000000000000000000000000
Amplicon based sequencing of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) isolated from 16 wastewater catchments in Jefferson County, Kentucky USA over a multi-week period 1040 1.5 TB 3T 2019-10-11 2022-07-18
85000000000000007636785686885686885348565643240312400000000000000000000000000000000000000000
Wastewater SARS-CoV-2 Sequencing 3419 1 TB 3T 2020-07-23 2022-02-09
3780000000319102425561242472082752972381972592142152602673781030000000000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance System (PaWSS) SARS-CoV-2 Monitoring (Biobot Analytics) 1168 1 TB 2T 2023-01-09 2023-02-07
20000000000000000000000000000000000000120000000000000000000000000000000000
pathogen wastewater surveillance (Verily Life Sciences/NWSS) 993 665.3 GB 2T 2025-07-20 2025-08-22
60500000000000000000000000000000000000000000000000000000000000000000003886050000
SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads 15408 750.8 GB 2T 2021-03-08 2025-08-26
5650000000000000007240100160151165150144128137229231380361391436357439484511358467555501565484549485400476419469366383463465403450376100002319323121012816118239911470000
Wastewater monitoring for SARS-CoV-2 across the United States (HHS Protect/NWSS/Biobot Analytics) 3188 495.8 GB 1T 2021-06-07 2021-08-19
11100000000000000000026721110000000000000000000000000000000000000000000000000000
Wastewater Surveillance for COVID-19 (AquaVitas/NWSS) 1280 624.7 GB 1T 2019-10-23 2021-06-18
6020323295145293923251316023040006000000000000000000000000000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from MO wastewater 12762 309.7 GB 1T 2021-01-06 2025-08-04
3990000000000000114325730426239531637825524329020030516213314429426230639928821330820422431428429826313126232126127224720130326023522314816226728027723717314621318410011859270680000
Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater 576 402.9 GB 1T 2022-01-08 2022-12-31
600000000000000000000000000474848604848604843453645000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance, Denmark 2021-2023 5348 450.2 GB 672B 2021-10-26 2023-01-24
67100000000000000000000009957853949554867137023633123020217720228123315600000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Georgia Public Health Laboratory 805 295.9 GB 640B 2023-02-28 2025-07-22
800000000000000000000000000000000000000011613410722413232322018100000000000008000000
Sequencing of SARS-CoV-2 in Wastewater-Washoe County 161 289 GB 617B 2020-11-20 2021-06-20
10000000000010101001000000000000000000000000000000000000000000000000000000
Optimised protocol for monitoring SARS-CoV-2 in wastewater using RC-PCR 1458 184.5 GB 607B 2021-06-10 2022-03-26
1.13K0000000000000000001480000007701.13K000000000000000000000000000000000000000000000
CDC NWSS - SARS-CoV-2 Wastewater Sequencing 2388 209.8 GB 507B 2014-08-01 2025-08-26
1290000000000000000000000000000000000132947425461345347476469567899107117109639810111912911384232877531524840331020000
SARS-CoV-2 wastewater surveillance in Arkansas Metagenome 269 262.9 GB 492B 2020-12-28 2024-04-16
12000000000000184030657071289788884777128847888487988488800000000000000000000
Wastewater Raw sequence reads for SARS-CoV-2 946 114.1 GB 485B 2025-08-15 2025-08-15
946000000000000000000000000000000000000000000000000000000000000000000009460000
Wisconsin wastewater project: Wisconsin State Laboratory of Hygiene 2975 216 GB 477B 2022-01-10 2025-08-14
13600000000000000000000000009233128164763415675728180737566513028577595120112136839141484612211512011481100121117802619019200000
Wastewater study of severe acute respiratory syndrome coronavirus 2 in Newport Oregon 116 234.6 GB 464B 2020-06-10 2020-12-09
52000000523949273000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 surveillance from North Carolina wastewater 1809 423.7 GB 458B 2022-08-03 2023-07-06
18900000000000000000000000000000000165179174159162128172184157189138200000000000000000000000000000
Implementation of Genomic Wastewater Based Biosurveillance for all Communicable Infectious Diseases 111 230.3 GB 442B 2021-12-05 2022-01-09
73000000000000000000000000733800000000000000000000000000000000000000000000000
SARS-CoV-2 sequencing in Slovak wastewaters 1126 133.6 GB 420B 2022-01-03 2022-08-31
208000000000000000000000000064129143138149972081980000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 1680 54.4 GB 345B 2020-11-24 2025-02-25
204000000000002091204522535283579792710412820000016413634323730263038203121333732303693436343436343528333635130000000000
SARS-CoV2 variant analysis in wastewater in six Swedish cities from 2021-2022 355 202.9 GB 329B 2021-11-01 2022-12-26
39000000000000000000000001128322418153024193024393823000000000000000000000000000000000000
Wastewater genomic sequencing for SARS-CoV-2 variants surveillance in wastewater-based epidemiology applications 76 73.2 GB 294B 2022-01-24 2022-08-14
1300000000000000000000000002137001111110000000000000000000000000000000000000000
Data from the Danish SARS-CoV-2 wastewater surveillance 1472 169.8 GB 294B 2023-08-08 2024-08-13
290000000000000000000000000000000000000000000002892902612401820000046109550000000000000000
Sars-CoV-2 WGS Sequencing from Wastewater samples from Toronto Pearson and Toronto, Ontario 1409 88.4 GB 277B 2018-01-03 2023-09-24
8200000000000000000000000004055707474797178757281638268779881088000000000000000000000000000
GenomeTrakr wastewater project: Nevada State Public Health Laboratory 433 107 GB 276B 2021-09-14 2022-07-16
58000000000000000000000173230304758485254432200000000000000000000000000000000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 652 145.5 GB 270B 2021-12-14 2022-11-29
18300000000000000000000000012183944658726553201716160000000000000000000000000000000000000
Virginia surveillance of SARS-CoV-2 in wastewater 1618 107 GB 254B 2023-01-01 2025-01-02
960000000000000000000000000000000000000967277687241626763627080918375523849867877542165600000000000
US National Wastewater Surveillance System (NWSS) wastewater project: NYC DOHMH 1828 99.2 GB 240B 2024-03-03 2025-08-22
1250000000000000000000000000000000000000000000000000001191259511012511111010984759698110115941468410000
SARS-CoV2 variant analysis in Swedish wastewater samples collected in 2023 1138 135.9 GB 222B 2023-05-29 2023-12-25
2830000000000000000000000000000000000000000016628866206283223194000000000000000000000000
Sequencing of SARS-CoV-2 RNA fragments in wastewater detects the spread of new variants during major events 64 61.8 GB 210B 2021-11-12 2023-01-24
2900000000000000000000000112900001200000001200000000000000000000000000000000000
Targeted Amplicon and Metagenomic Sequencing from Ontario Wastewater 869 48 GB 184B 2021-10-01 2022-09-18
13200000000000000000000009477111313212412912243263018000000000000000000000000000000000000000
Wastewater metagenomics sequencing for the monitoring of SARS-CoV-2 dynamics in Rotterdam, the Netherlands 695 104.9 GB 181B 1905-07-13 2021-12-06
1160000000001832225330901169593715640076000000000000000000000000000000000000000000000000
New York State wastewater surveillance program for SARS-CoV-2: NY Department of Health Laboratory 16788 39 GB 179B 2022-09-11 2024-12-31
93900000000000000000000000000000000046003627561678615850825742939778860674844793809660818781718642446379712627361000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Delaware Public Health Lab 401 102.4 GB 174B 2023-11-29 2024-09-11
11600000000000000000000000000000000000000000000000127024116242438515946000000000000000
CDC's Traveler-Based Genomic Surveillance Program 71 63.3 GB 169B 2025-07-18 2025-08-22
60000000000000000000000000000000000000000000000000000000000000000000011600000
A longitudinal study of sequencing SARS-CoV-2 in wastewater samples reveal the variants prevalence 129 115.2 GB 164B 2020-07-31 2022-12-09
1400000001610035411111000214888746484087000000000000000000000000000000000000
A gold standard dataset for lineage abundance estimation from wastewater 252 162.5 GB 160B 2023-04-10 2023-04-27
252000000000000000000000000000000000000000025200000000000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune' India 1068 50.6 GB 147B 2021-11-01 2023-05-30
1390000000000000000000000036748377878525511396665398912196085480000000000000000000000000000000
Microbiome analysis for wastewater surveillance during COVID-19 17 68.9 GB 146B 2021-02-11 2021-04-21
60000000000000066500000000000000000000000000000000000000000000000000000000
Wastewater-based surveillance and molecular epidemiology of SARS-CoV-2 in northern South Africa 57 17.6 GB 134B 2021-01-18 2022-05-10
1300000000000001104771340037310150000000000000000000000000000000000000000000
Wastewater sequencing of SARS-CoV2 in Liverpool, UK 1341 24.2 GB 131B 2020-11-02 2021-06-21
3220000000000032218221714616510913463000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Health 440 47.7 GB 109B 2021-11-29 2022-10-21
6300000000000000000000000802154556263412847392200000000000000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA (RADx-rad) 994 11 GB 108B 2021-07-19 2022-09-26
10400000000000000000002386687374781046162617168548328000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: New Jersey Department of Health 1669 68.2 GB 105B 2024-03-27 2025-08-22
1160000000000000000000000000000000000000000000000000001110910995111107111116939511510310668832241960000
SARS-CoV-2 Wastewater Sequencing 496 52.8 GB 104B 2020-02-29 2021-03-08
138002618610610242640404413896000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 wastewater whole genome amplicon sequencing 184 30 GB 101B 2020-11-24 2021-10-20
9400000000000201096301420943500000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Virginia Division of Consolidated Laboratory Services 79 49.8 GB 99B 2021-11-30 2022-06-29
2200000000000000000000000122414132221000000000000000000000000000000000000000000
Aircraft Wastewater Surveillance - SARS-CoV-2 Monitoring (Ginkgo Bioworks) 25 36.7 GB 96B 2022-08-04 2022-09-08
1900000000000000000000000000000000196000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance: Massachusetts State Public Health Laboratory 334 52.7 GB 93B 2023-06-13 2024-01-16
7100000000000000000000000000000000000000000040657155012583300000000000000000000000
SARS-CoV-2 surveillance from Wake County, North Carolina wastewater 543 34.7 GB 88B 2022-08-01 2023-06-28
58000000000000000000000000000000005847515148524654454447000000000000000000000000000000
Identifying SARS-CoV-2 VOCs in Brisbane wastewater sample 59 43.9 GB 85B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses 310 6.4 GB 84B 2021-04-06 2022-01-31
590000000000000000111154415993746261600000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Agriculture 96 45.4 GB 76B 2021-12-17 2022-06-21
21000000000000000000000000101815482120000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Massachusetts Department of Public Health 240 24.8 GB 74B 2022-01-07 2022-03-30
1000000000000000000000000002310000000000000000000000000000000000000000000000
SARS-CoV-2 via wastewater Raw sequence reads 86 26.9 GB 66B 2020-11-30 2021-02-22
290000000000012928280000000000000000000000000000000000000000000000000000000000
SARS-CoV2 amplicons from wastewater and synthetic 326 18.5 GB 60B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
Environmental samples Raw sequence reads 48 35.1 GB 59B 2020-09-23 2020-09-23
4800000000048000000000000000000000000000000000000000000000000000000000000000
Wastewater metagenome of buildings (RTU) 7 49.9 GB 58B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
Wastewater surveillance of open drains for SARS-CoV-2 lineages : Maharashtra State (India) during June 2022 to May 2023 556 41.5 GB 47B 2022-06-06 2023-05-23
9400000000000000000000000000000013436330698717639486450000000000000000000000000000000
California sewage metatranscriptomes enriched for respiratory viruses 18 27.8 GB 47B 2020-05-13 2020-07-01
90000069300000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: New Mexico State University | Food Safety Laboratory 38 16.5 GB 46B 2022-07-27 2022-11-10
1300000000000000000000000000000003139850000000000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from CA wastewater 192 15.9 GB 42B 2021-08-06 2022-03-02
470000000000000000000020034353547174000000000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance - Facility Level SARS-CoV-2 Monitoring (Ginkgo Bioworks) 12 13.3 GB 41B 2022-09-26 2023-05-31
50000000000000000000000000000000001200110520000000000000000000000000000000
CAGABLEA 118 41 GB 41B 2020-10-19 2021-03-23
220000000000171819222121000000000000000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 60 15.3 GB 38B 2022-01-17 2022-07-18
11000000000000000000000000069119911500000000000000000000000000000000000000000
Wisconsin wastewater lineage 271 16.4 GB 37B 2022-01-02 2023-03-09
48000000000000000000000000011214827142034171998209113000000000000000000000000000000000
Assessing multiplex tiling PCR sequencing approaches for detecting genomic variants of SARS-CoV-2 in municipal wastewater 106 33.6 GB 36B 2021-02-07 2021-05-14
460000000000000010454650000000000000000000000000000000000000000000000000000000
Coronavar, sequencing Luxembourg wastewater samples 233 21.7 GB 33B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
Effective Inhibitor Removal from Wastewater Samples Increases Sensitivity of RT-dPCR and Sequencing Analyses and Enhances the Stability of Wastewater-Based Surveillance 36 13.6 GB 32B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
Wastewater sequencing for SARS-CoV-2 59 11.8 GB 31B 2021-01-01 2021-04-27
1600000000000001614151400000000000000000000000000000000000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune, India (December' 2023 to April'2024) 534 28.7 GB 31B 2023-12-01 2024-04-15
161000000000000000000000000000000000000000000000000128161118804700000000000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 77 13.4 GB 30B 2022-01-16 2022-07-13
2700000000000000000000000001311382711400000000000000000000000000000000000000000
Validation study of covid sequencing from wastewater 150 5.7 GB 27B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
A pan-European study of SARS-CoV-2 variants in wastewater under the EU Sewage Sentinel System 54 17.7 GB 27B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
NYC Wastewater Raw Sequence Reads 311 7.9 GB 27B 2021-01-31 2022-03-21
460000000000000121518425942923334616282110000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: TGen North 229 13.3 GB 25B 2021-10-04 2023-03-23
490000000000000000000000304928482400001820127587000000000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA 92 13.8 GB 24B 2020-04-07 2020-06-16
430000124336000000000000000000000000000000000000000000000000000000000000000000
Monitoring SARS-CoV-2 in Houston wastewater 256 14.1 GB 24B 2021-04-19 2021-11-29
38000000000000000038000000380000000000000000000000000000000000000000000000000
Genome Trakr wastewater project: NJDA 121 7.7 GB 24B 2022-01-11 2022-07-15
2100000000000000000000000001921191414191500000000000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in on-campus STP : INDIA 191 14.9 GB 23B 2021-11-08 2024-04-25
2200000000000000000000000479864154453210585653133781020222200000000000000000000
"SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater a longitudinal study in Bengaluru, India" 303 4.6 GB 21B 2022-01-03 2022-06-27
1260000000000000000000000000126529183464000000000000000000000000000000000000000000
GenomeTrakr wastewater project: SC DHEC PHL 43 6.9 GB 21B 2023-02-14 2023-03-28
24000000000000000000000000000000000000001924000000000000000000000000000000000
Sequencing of SARS-CoV-2 RNA from wastewater influent samples collected in Pennsylvania for genomic surveillance 97 7.6 GB 20B 2023-06-01 2023-10-17
550000000000000000000000000000000000000000008120225500000000000000000000000000
GenomeTrakr Wastewater Project: Thakur Molecular Epidemiology Laboratory, NC State University 48 10 GB 19B 2022-04-04 2023-06-05
90000000000000000000000000000472011200756391000000000000000000000000000000
Berlin Wastewater Raw Sequence Reads, SARS-CoV-2 amplicon sequencing 62 10.6 GB 18B 2021-02-09 2022-01-13
13000000000000007131074004446300000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Raw sequence reads 192 1.1 GB 18B 2022-09-22 2023-10-19
860000000000000000000000000000000003000250040647863900000000000000000000000000
GenomeTrakr wastewater project: Penn State 25 7.8 GB 17B 2022-01-10 2022-06-16
80000000000000000000000000840544000000000000000000000000000000000000000000
Metagenomics analysis of wastewater influents from wastewater treatment facilities across Ontario 48 7.6 GB 17B 2021-11-29 2022-02-09
26000000000000000000000001182630000000000000000000000000000000000000000000000
Wastewater surveillance of SARS-CoV-2 in Victoria, Australia 411 2.8 GB 16B 2021-11-15 2021-12-21
25200000000000000000000000159252000000000000000000000000000000000000000000000000
Wastewater Surveillance 17 4.6 GB 15B 2020-11-02 2021-01-25
70000000000076400000000000000000000000000000000000000000000000000000000000
Wastewater ARCTIC SARS-Cov-2 sequencing 5 6.3 GB 14B 2020-12-28 2021-01-17
40000000000001400000000000000000000000000000000000000000000000000000000000
Pilot sequencing study for wastewater monitoring for SARS-CoV-2 (Biobot Analytics/Ginkgo Bioworks) 30 6.2 GB 14B 2020-12-27 2021-01-19
2200000000000082200000000000000000000000000000000000000000000000000000000000
NWSS Wastewater Project: North Carolina State Laboratory of Public Health 87 8.1 GB 13B 2025-07-29 2025-08-22
49000000000000000000000000000000000000000000000000000000000000000000049380000
Improved Robustness of SARS-CoV-2 Whole-Genome Sequencing from Wastewater with a Nonselective Virus Concentration Method 94 3.5 GB 13B 2021-10-01 2022-04-12
200000000000000000000000181112121320800000000000000000000000000000000000000000000
Data from SARS-CoV-2 wastewater surveillance of aircraft from China to Denmark 6 7.6 GB 11B 2023-01-12 2023-02-10
40000000000000000000000000000000000000420000000000000000000000000000000000
Raw sequence reads obtained from NGS of wastewater samples 79 2.7 GB 10B 2022-08-01 2022-09-29
41000000000000000000000000000000003841000000000000000000000000000000000000000
Detection of SARS-CoV-2 with VirCapSeq capture on wastewater metagenomic samples 6 5 GB 10B 2020-03-15 2020-07-14
50005000100000000000000000000000000000000000000000000000000000000000000000
Targeted amplicon sequencing of wastewater samples for detecting SARS-CoV-2 variants with high sensitivity and resolution 79 1.8 GB 10B 2021-01-27 2022-02-25
60000000000000110001244002640000000000000000000000000000000000000000000000
Detection of SARS-CoV-2 variants and their proportions in wastewater samples by next-generation sequencing in Finland 15 1.9 GB 8B 2021-11-08 2022-02-21
50000000000000000000000043530000000000000000000000000000000000000000000000
Danish SARS-CoV-2 wastewater surveillance - pilot 29 5 GB 8B 2023-06-13 2023-06-13
2900000000000000000000000000000000000000000029000000000000000000000000000000
Wastewater Project: Rhode Island Department of Health 60 2.4 GB 8B 2022-12-07 2025-02-13
90000000000000000000000000000000000009050023205305730000000005740000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Florida Department of Health 22 2.2 GB 8B 2023-12-31 2024-02-20
11000000000000000000000000000000000000000000000000111100000000000000000000000
The Impact of Viral Concentration Method on Quantification and Long Amplicon Nanopore Sequencing of SARS-CoV-2 and Noroviruses in Wastewater 63 6.5 GB 8B 2021-11-12 2021-11-14
6000000000000000000000000600000000000000000000000000000000000000000000000000
Early Detection of SARS-CoV-2 Variants Using Genomic Surveillance: Insights from Aircraft Wastewater and Nasal Swabs at Kigali International Airport, Rwanda 59 7.2 GB 7B 2023-08-31 2024-05-31
21000000000000000000000000000000000000000000001327021153250000000000000000000
Norovirus genotyping in Sydney wastewater 2018-2020 108 3.2 GB 7B 2018-01-01 2020-12-01
30333333333333000000000000000000000000000000000000000000000000000000000000
ES SARS-CoV-2 Malawi 175 678.8 MB 7B 2020-11-30 2022-04-12
310000000000011724321131912642422219600000000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance in Shenzhen during the transition from "dynamic COVID-zero" to "opening up" policy 43 1.7 GB 7B 2022-09-22 2023-01-17
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Genome sequencing of SARS-CoV-2 in wastewater confirm early arrival of omicron at Frankfurt airport but limited spread in Frankfurt city wastewater during November 2021 4 4.8 GB 7B 2021-11-04 2021-11-23
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Coronastep, sequencing Luxembourg wastewater samples 97 2.9 GB 6B 2020-03-30 2021-03-04
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WISER_Mock_Community_Data 120 2.7 GB 6B 2022-02-14 2022-03-15
60000000000000000000000000006060000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing of wastewater in Oregon 5 3 GB 6B 2021-03-26 2021-04-04
30000000000000002300000000000000000000000000000000000000000000000000000000
SARS-CoV-2 sequencing data, generated at INAB-CERTH, and retrieved from wastewater samples 23 3.6 GB 6B 2020-05-10 2021-06-28
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Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK 340 2.5 GB 6B 2020-03-30 2020-05-12
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RBD amplicon sequencing data of SARS-CoV-2 in wastewater 217 3.6 GB 6B 2022-03-16 2023-08-08
1500000000000000000000000000041212151215121512121512121215121260000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: NH Public Health Laboratories 526 1.7 GB 5B 2020-12-01 2025-08-11
6300000000000025000000000000000000000000000000000000000000000050395654636258042130000
GenomeTrakr wastewater project: New Jersey Department of Health - Public Health and Environmental Laboratories 54 2 GB 5B 2022-01-18 2022-07-14
16000000000000000000000000050671216800000000000000000000000000000000000000000
Diagnostic Microbiology & Infectious Disease Rapid and sensitive detection of Sars-CoV-2 variants in nasopharyngeal swabs and wastewaters 6 2.4 GB 4B None None
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SARS-CoV-2 wastewater surveillance of pooled aircraft and airport samples from Denmark 10 2.8 GB 4B 2023-01-02 2023-02-01
80000000000000000000000000000000000000820000000000000000000000000000000000
Wastewater based SARS-CoV-2 genomic surveillance in Ethiopia 79 1.9 GB 4B 2025-07-28 2025-07-28
7900000000000000000000000000000000000000000000000000000000000000000007900000
Metagenomic monitoring of SARS-CoV-2 in effluents in Rio de Janeiro. 18 2.4 GB 4B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
Long Amplicon Nanopore Sequencing for Dual-Typing RdRp and VP1 Genes of Norovirus Genogroups I and II in Wastewater 23 3.1 GB 4B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
UTK SARS-CoV-2 Wastewater Surveillance 1 1.3 GB 4B 2020-10-12 2020-10-12
10000000000100000000000000000000000000000000000000000000000000000000000000
Olivar wastewater samples 32 938.7 MB 4B 2022-08-08 2022-08-15
1600000000000000000000000000000000160000000000000000000000000000000000000000
Wastewater Metagenome 48 1 GB 3B 2025-07-31 2025-08-16
28000000000000000000000000000000000000000000000000000000000000000000020280000
GenomeTrakr wastewater project: Data of Limited Quality 10 1.5 GB 3B 2021-11-30 2021-12-21
60000000000000000000000064000000000000000000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in Pune city 6 3.5 GB 3B 2021-03-10 2021-03-30
50000000000000005000000000000000000000000000000000000000000000000000000000
Whole genome sequences of SARS-CoV-2 from wastewater samples in Arizona 9 687.9 MB 3B 2025-07-30 2025-07-30
90000000000000000000000000000000000000000000000000000000000000000000900000
Chronic Shedding of a SARS-CoV-2 Alpha Variant Lineage Q.3/Q.4 in Wastewater 17 978.9 MB 3B 2021-09-21 2023-05-15
30000000000000000000001110101101001000022320000000000000000000000000000000
SARS-CoV-2 wastewater genome sequencing for SASEA 49 155.1 MB 3B 2020-12-02 2021-06-23
23000000000000102381511000000000000000000000000000000000000000000000000000000
First seen in local wastewater – Novel virus variants observed weeks prior to routine surveillance underscore the potential of wastewater-based epidemiology 53 1.7 GB 3B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Texas Department of State Health Services 12 1.2 GB 2B 2022-01-11 2022-08-02
50000000000000000000000000500123010000000000000000000000000000000000000000
Wastewater-based Surveillance in Selangor Malaysia 5 2.3 GB 2B 2023-04-10 2024-04-05
30000000000000000000000000000000000000000300000000000200000000000000000000
SARS-CoV-2 sequencing upon wastewater filtration 12 1.2 GB 2B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
COVID-19 Environmental Surveillance in Karachi, Pakistan: Genome sequencing and assembly 115 1.2 GB 2B 2021-01-07 2022-01-20
25000000000000030010712171488252000000000000000000000000000000000000000000000000
SARS-CoV-2 Wastewater Surveillance in Norway 2022-2023 8 1 GB 2B 2023-03-27 2023-04-10
40000000000000000000000000000000000000004400000000000000000000000000000000
Nanopore sequencing of SARS-CoV-2 VOC B.1.1.7 from Canadian wastewater using tiled amplicons 2 857.5 MB 1B 2021-01-26 2021-01-26
20000000000000200000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: ADRDL South Dakota 13 701.1 MB 1B 2022-05-12 2023-04-26
30000000000000000000000000000012111130020100000000000000000000000000000000
Tracking SARS-CoV-2 variants in wastewater in San Pedro de la Paz, Chile 9 703.3 MB 1B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000
Wastewater SARS-CoV-2 testing at SHL 163 464.2 MB 1B 2023-08-21 2025-05-19
200000000000000000000000000000000000000000000026131413151021035137101320118420000000
US National Wastewater Surveillance System (NWSS) wastewater project: Pennsylvania Bureau of Labs 2 817.6 MB 1B 2023-07-03 2023-07-05
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Metatranscriptomics reveals SARS-CoV-2 mutations present in wastewater of the Frankfurt metropolitan area in Southern Germany 3 713.4 MB 821M 2020-03-04 2020-03-04
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US National Wastewater Surveillance System (NWSS) wastewater project: Philadelphia Public Health Laboratory 312 435.3 MB 803M 2024-06-26 2025-04-30
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Genomic surveillance of SARS-CoV-2 in wastewater in Gujarat, India 4 429.8 MB 748M 2020-10-22 2021-02-08
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Wastewater2021 9 301.2 MB 744M None None
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SARS-CoV-2 WGS from MO Wastewater Raw sequence reads 1 311.6 MB 622M 2021-05-03 2021-05-03
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SARS-CoV-2 on Environmental Surface 15 378.7 MB 378M 2022-03-04 2022-10-14
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Effects of O2 on accumulation of nitrous and elemental sulfur and microbial community structure in double short-cut sulfur autotrophic denitrification system 7 26.8 MB 323M 2025-08-07 2025-08-07
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UPHC Pathogen Biosurveillance Program 10 69.9 MB 301M 2025-08-15 2025-08-15
1000000000000000000000000000000000000000000000000000000000000000000000100000
Community-level SARS-CoV-2 sequence diversity revealed by wastewater sampling 30 182.5 MB 225M 2020-06-28 2021-01-31
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SARS-CoV-2 sequencing of university campus wastewater and wastewater treatment plant influent 19 136.2 MB 167M 2020-07-19 2020-09-30
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ONT Sequencing for SARS-CoV-2 in KAUST wastewater 36 114.9 MB 131M 2020-08-12 2022-09-25
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Chlorine disinfectant significantly changed microfauna habitat, community structure, and colonization mode in wastewater treatment plants during the COVID-19 pandemic 2 15.4 MB 79M None None
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US National Wastewater Surveillance System (NWSS) wastewater project: Kansas Health and Environment Laboratory 13 1.8 MB 3M 2025-08-21 2025-08-21
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SARS-CoV-2 wastewater surveillance in Northern Ireland, 2021-2023 4221 0 B 0 2021-11-15 2023-03-09
5530000000000000000000000016525932739155333442636833222222012410012410112550000000000000000000000000000000000
SARS-CoV-2 genome sequencing across Autosampler, COSCa-ball and Torpedo samplers 75 0 B 0 2023-03-14 2023-05-04
27000000000000000000000000000000000000000272160000000000000000000000000000000
High-resolution and real-time wastewater viral surveillance by Nanopore sequencing 28 0 B 0 2022-10-02 2023-04-16
20000000000000000000000000000000000110220200000000000000000000000000000000
Evaluation of sampling methods for genomic surveillance of SARS-CoV-2 variants in aircraft wastewater samples 85 0 B 0 2022-11-03 2023-01-11
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SARS-CoV-2 genome sequencing in influent wastewater and primary sludge 80 0 B 0 2022-04-02 2023-12-17
230000000000000000000000000000230000000000000000182416000000000000000000000000
Reverse-transcription loop-mediated isothermal amplification and nanopore sequencing (LAMPore) for SARS-CoV-2 wastewater-based surveillance 77 0 B 0 2020-12-22 2020-12-22
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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa, a highly diverged BA.2-related lineage 29 0 B 0 2023-08-22 2023-11-14
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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa 10 0 B 0 None None
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SARS-CoV-2 Whole-Genome Sequencing from Hospital Wastewater 167 0 B 0 2021-05-05 2023-09-27
220000000000000000074466011016554197303711132262000123000000000000000000000000000
16S analysis of university dormitory raw wastewater samples, collected during the COVID-19 Pandemic. 173 0 B 0 None None
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Wastewater based genomic surveillance of SARS-CoV-2 throughout Germany 231 0 B 0 None None
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SARS-CoV-2 Wastewater-based Genomic Epidemiology (WGE) in Japan 21 0 B 0 2023-02-01 2023-11-15
30000000000000000000000000000000000000023232123210000000000000000000000000
SARS-CoV-2 Wastewater Surveillance in Southern Nevada 1385 0 B 0 2021-09-06 2023-10-30
1140000000000000000000002519276781441419114907572715856897243415414274056744300000000000000000000000000

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DISCLAIMER: The raw data published on this dashboard has been obtained from deidentified and aggregated materials collected in accordance with the law and ethical guidelines governing the research studies. This data is made available for informational purposes only. This data set has not been independently verified, validated, or peer reviewed. It may contain errors, omissions, or artifacts inherent to the methods used in data collection and processing and is provided as is without any warranty of accuracy or completeness.

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