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Acknowledgements
Sequence Read Archive SARS-CoV-2 Wastewater Submissions
Last Updated: 2025-04-15
Study Title Submission Metadata Dates Submissions Per Month Since Jan 2020
Total Submissions Sequencing File Sizes Total Bases Sequenced Earliest Submission Most Recent Submission
Wastewater monitoring for SARS-CoV-2 across the United States (CDC/NWSS/Biobot Analytics) 22969 18.5 TB 48T 2022-05-03 2023-09-15
24800000000000000000000000000000291471562231261952352282472202482042391821842178000000000000000000000
Surveillance of SARS-CoV-2 genomic variants in wastewater in Switzerland 8621 5.5 TB 23T 2020-07-09 2024-11-04
38700000003551127428155211181184186191195188201215211188184207193203184148186187150183190387216237226229225213302298314294298112115128106139276881087916000000
SARS-CoV-2 wastewater surveillance (Verily Life Sciences) 10904 2.8 TB 12T 2021-11-29 2025-05-04
504000000000000000000000009729310516813211711712511911411412813932931644044850450331719532038435031427231432434733631733132631833824920233129624417256
South Florida - Rapid Acceleration of Diagnostics: Development and Proof-of-Concept Implementation of the South Florida Miami RADx-rad 2128 4.6 TB 9T 2020-09-30 2022-12-20
2350000000001221323556679710388831111379059110115235147171815045393320781300000000000000000000000000000
Biobot Analytics Wastewater Monitoring 4190 3.8 TB 9T 2021-11-17 2022-10-05
35000000000000000000000006323531241618121612730000000000000000000000000000000
OHA/OSU wastewater project 3981 2.4 TB 7T 2002-04-12 2025-05-02
2350000000000000000000000000002007338102188235223176931581971182332049918519112777818772332319671281341291204441100926028
US National Wastewater Surveillance System (NWSS) wastewater project: Illinois Wastewater Surveillance System (IWSS) 12241 2.3 TB 7T 2021-12-01 2024-11-26
66500000000000000000000000011024440328642249056446366554641640432038735241435936833533832535441240037343332930620821619631217632118165000000
Wastewater SARS-CoV-2 surveillance at UPHL 10429 1.9 TB 5T 2021-09-23 2025-04-23
3440000000000000000000006457178214216206246233297298249293245232230226162225292250296305201344224269218137267309259305203266237301239302682072422392071640
Wastewater monitoring of COVID in UK 23536 916.6 GB 5T 2021-10-01 2022-03-12
4.80K00000000000000000000004.07K4.72K3.98K4.80K4.61K1.36K00000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Ohio Department of Health/The Ohio State University Applied Microbiology Services Laboratory 9224 1.6 TB 4T 2021-12-19 2024-12-23
37100000000000000000000000082188836416725721919027927830926827931727627230923821523727627736128527537129734124619214227628336328621321300000
WW_seq_SARS-CoV-2_SLO 614 1.4 TB 3T 2021-02-04 2023-01-31
66000000000000001443324046445066405043200121212121218126012180000000000000000000000000000
Amplicon based sequencing of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) isolated from 16 wastewater catchments in Jefferson County, Kentucky USA over a multi-week period 1040 1.5 TB 3T 2019-10-11 2022-07-18
8500000000000000763678568688568688534856564324031240000000000000000000000000000000000
Wastewater SARS-CoV-2 Sequencing 3419 1 TB 3T 2020-07-23 2022-02-09
378000000031910242556124247208275297238197259214215260267378103000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance System (PaWSS) SARS-CoV-2 Monitoring (Biobot Analytics) 1168 1 TB 2T 2023-01-09 2023-02-07
2000000000000000000000000000000000000012000000000000000000000000000
SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads 15830 813.6 GB 2T 2021-03-08 2025-05-01
56500000000000000072401001601511651501441281372292313803613914363574394845113584675555015654845494854004764194693663834634654034504014023212017957571932312107014985
Wastewater monitoring for SARS-CoV-2 across the United States (HHS Protect/NWSS/Biobot Analytics) 3188 495.8 GB 1T 2021-06-07 2021-08-19
1110000000000000000002672111000000000000000000000000000000000000000000000
Wastewater Surveillance for COVID-19 (AquaVitas/NWSS) 1280 624.7 GB 1T 2019-10-23 2021-06-18
602032329514529392325131602304000600000000000000000000000000000000000000000000000
pathogen wastewater surveillance (Verily Life Sciences/NWSS) 701 368.3 GB 1T 2025-04-11 2025-05-05
3760000000000000000000000000000000000000000000000000000000000000000376325
SARS-CoV-2 Raw sequence reads from MO wastewater 12531 310.1 GB 1T 2021-01-06 2025-04-30
39900000000000001143257304262395316378255243290200305162133144294262306399288213308204224314284298263131262321261272247201303260235223147162267280277237173146213184100950
Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater 576 402.9 GB 1T 2022-01-08 2022-12-31
60000000000000000000000000047484860484860484345364500000000000000000000000000000
SARS-CoV-2 wastewater surveillance, Denmark 2021-2023 5348 450.2 GB 672B 2021-10-26 2023-01-24
6710000000000000000000000995785394955486713702363312302021772022812331560000000000000000000000000000
Sequencing of SARS-CoV-2 in Wastewater-Washoe County 161 289 GB 617B 2020-11-20 2021-06-20
1000000000001010100100000000000000000000000000000000000000000000000
Optimised protocol for monitoring SARS-CoV-2 in wastewater using RC-PCR 1458 184.5 GB 607B 2021-06-10 2022-03-26
1.13K0000000000000000001480000007701.13K00000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Georgia Public Health Laboratory 725 270.4 GB 560B 2023-02-28 2024-06-17
2300000000000000000000000000000000000000116134107224132323220181000000000000
SARS-CoV-2 wastewater surveillance in Arkansas Metagenome 269 262.9 GB 492B 2020-12-28 2024-04-16
1200000000000018403065707128978888477712884788848798848880000000000000
CDC NWSS - SARS-CoV-2 Wastewater Sequencing 2068 201.1 GB 481B 2014-08-01 2025-05-01
12900000000000000000000000000000000001329474254613453474764695678991071171096398101119129113842328775313199
Wisconsin wastewater project: Wisconsin State Laboratory of Hygiene 2849 214.3 GB 474B 2022-01-10 2025-04-23
136000000000000000000000000092331281647634156757281807375665130285775951201121368391414846122115120114609912111780220
Wastewater study of severe acute respiratory syndrome coronavirus 2 in Newport Oregon 116 234.6 GB 464B 2020-06-10 2020-12-09
5200000052394927300000000000000000000000000000000000000000000000000000
SARS-CoV-2 surveillance from North Carolina wastewater 1809 423.7 GB 458B 2022-08-03 2023-07-06
1890000000000000000000000000000000016517917415916212817218415718913820000000000000000000000
Implementation of Genomic Wastewater Based Biosurveillance for all Communicable Infectious Diseases 111 230.3 GB 442B 2021-12-05 2022-01-09
7300000000000000000000000073380000000000000000000000000000000000000000
SARS-CoV-2 sequencing in Slovak wastewaters 1126 133.6 GB 420B 2022-01-03 2022-08-31
20800000000000000000000000006412914313814997208198000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 1680 54.4 GB 345B 2020-11-24 2025-02-25
20400000000000209120452253528357979271041282000001641363432373026303820312133373230369343634343634352833363513000
SARS-CoV2 variant analysis in wastewater in six Swedish cities from 2021-2022 355 202.9 GB 329B 2021-11-01 2022-12-26
3900000000000000000000000112832241815302419302439382300000000000000000000000000000
Wastewater genomic sequencing for SARS-CoV-2 variants surveillance in wastewater-based epidemiology applications 76 73.2 GB 294B 2022-01-24 2022-08-14
130000000000000000000000000213700111111000000000000000000000000000000000
Data from the Danish SARS-CoV-2 wastewater surveillance 1472 169.8 GB 294B 2023-08-08 2024-08-13
29000000000000000000000000000000000000000000000289290261240182000004610955000000000
Sars-CoV-2 WGS Sequencing from Wastewater samples from Toronto Pearson and Toronto, Ontario 1409 88.4 GB 277B 2018-01-03 2023-09-24
820000000000000000000000000405570747479717875728163826877988108800000000000000000000
GenomeTrakr wastewater project: Nevada State Public Health Laboratory 433 107 GB 276B 2021-09-14 2022-07-16
5800000000000000000000017323030475848525443220000000000000000000000000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 652 145.5 GB 270B 2021-12-14 2022-11-29
1830000000000000000000000001218394465872655320171616000000000000000000000000000000
Virginia surveillance of SARS-CoV-2 in wastewater 1618 107 GB 254B 2023-01-01 2025-01-02
96000000000000000000000000000000000000096727768724162676362708091837552384986787754216560000
US National Wastewater Surveillance System (NWSS) wastewater project: NYC DOHMH 1500 101.9 GB 245B 2024-03-03 2025-05-02
12500000000000000000000000000000000000000000000000000011912595110125111110109847596981007928
SARS-CoV2 variant analysis in Swedish wastewater samples collected in 2023 1138 135.9 GB 222B 2023-05-29 2023-12-25
283000000000000000000000000000000000000000001662886620628322319400000000000000000
Sequencing of SARS-CoV-2 RNA fragments in wastewater detects the spread of new variants during major events 64 61.8 GB 210B 2021-11-12 2023-01-24
290000000000000000000000011290000120000000120000000000000000000000000000
Targeted Amplicon and Metagenomic Sequencing from Ontario Wastewater 869 48 GB 184B 2021-10-01 2022-09-18
1320000000000000000000000947711131321241291224326301800000000000000000000000000000000
Wastewater metagenomics sequencing for the monitoring of SARS-CoV-2 dynamics in Rotterdam, the Netherlands 695 104.9 GB 181B 1905-07-13 2021-12-06
116000000000183222533090116959371564007600000000000000000000000000000000000000000
New York State wastewater surveillance program for SARS-CoV-2: NY Department of Health Laboratory 16731 39 GB 179B 2022-09-11 2024-12-31
9390000000000000000000000000000000004600362756167861585082574293977886067484479380966081878171864244637971262730400000
US National Wastewater Surveillance System (NWSS) wastewater project: Delaware Public Health Lab 401 102.4 GB 174B 2023-11-29 2024-09-11
1160000000000000000000000000000000000000000000000012702411624243851594600000000
A longitudinal study of sequencing SARS-CoV-2 in wastewater samples reveal the variants prevalence 129 115.2 GB 164B 2020-07-31 2022-12-09
140000000161003541111100021488874648408700000000000000000000000000000
A gold standard dataset for lineage abundance estimation from wastewater 252 162.5 GB 160B 2023-04-10 2023-04-27
25200000000000000000000000000000000000000002520000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune' India 1068 50.6 GB 147B 2021-11-01 2023-05-30
139000000000000000000000003674837787852551139666539891219608548000000000000000000000000
Microbiome analysis for wastewater surveillance during COVID-19 17 68.9 GB 146B 2021-02-11 2021-04-21
6000000000000006650000000000000000000000000000000000000000000000000
Wastewater-based surveillance and molecular epidemiology of SARS-CoV-2 in northern South Africa 57 17.6 GB 134B 2021-01-18 2022-05-10
130000000000000110477134003731015000000000000000000000000000000000000
Wastewater sequencing of SARS-CoV2 in Liverpool, UK 1341 24.2 GB 131B 2020-11-02 2021-06-21
322000000000003221822171461651091346300000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: New Jersey Department of Health 1356 74.4 GB 112B 2024-03-27 2025-05-06
1760000000000000000000000000000000000000000000000000001110910995111107111116939511576017632
GenomeTrakr wastewater project: Washington State Department of Health 440 47.7 GB 109B 2021-11-29 2022-10-21
630000000000000000000000080215455626341284739220000000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA (RADx-rad) 994 11 GB 108B 2021-07-19 2022-09-26
1040000000000000000000238668737478104616261716854832800000000000000000000000000000000
CDC's Traveler-Based Genomic Surveillance Program 41 35.3 GB 105B 2025-04-13 2025-05-02
350000000000000000000000000000000000000000000000000000000000000000356
SARS-CoV-2 Wastewater Sequencing 496 52.8 GB 104B 2020-02-29 2021-03-08
13800261861061024264040441389600000000000000000000000000000000000000000000000000
SARS-CoV-2 wastewater whole genome amplicon sequencing 184 30 GB 101B 2020-11-24 2021-10-20
940000000000020109630142094350000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Virginia Division of Consolidated Laboratory Services 79 49.8 GB 99B 2021-11-30 2022-06-29
220000000000000000000000012241413222100000000000000000000000000000000000
Aircraft Wastewater Surveillance - SARS-CoV-2 Monitoring (Ginkgo Bioworks) 25 36.7 GB 96B 2022-08-04 2022-09-08
190000000000000000000000000000000019600000000000000000000000000000000
SARS-CoV-2 wastewater surveillance: Massachusetts State Public Health Laboratory 334 52.7 GB 93B 2023-06-13 2024-01-16
710000000000000000000000000000000000000000004065715501258330000000000000000
SARS-CoV-2 surveillance from Wake County, North Carolina wastewater 543 34.7 GB 88B 2022-08-01 2023-06-28
5800000000000000000000000000000000584751514852465445444700000000000000000000000
Identifying SARS-CoV-2 VOCs in Brisbane wastewater sample 59 43.9 GB 85B None None
5-500000000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses 310 6.4 GB 84B 2021-04-06 2022-01-31
59000000000000000011115441599374626160000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Agriculture 96 45.4 GB 76B 2021-12-17 2022-06-21
2100000000000000000000000010181548212000000000000000000000000000000000000
GenomeTrakr wastewater project: Massachusetts Department of Public Health 240 24.8 GB 74B 2022-01-07 2022-03-30
100000000000000000000000000231000000000000000000000000000000000000000
Surveillance of genomic variants of respiratory viruses in wastewater in Switzerland 30 22.5 GB 73B 2025-04-15 2025-04-18
300000000000000000000000000000000000000000000000000000000000000000300
SARS-CoV-2 via wastewater Raw sequence reads 86 26.9 GB 66B 2020-11-30 2021-02-22
29000000000001292828000000000000000000000000000000000000000000000000000
SARS-CoV2 amplicons from wastewater and synthetic 326 18.5 GB 60B None None
5-500000000000000000000000000000000000000000000000000000000000000000
Environmental samples Raw sequence reads 48 35.1 GB 59B 2020-09-23 2020-09-23
480000000004800000000000000000000000000000000000000000000000000000000
Wastewater metagenome of buildings (RTU) 7 49.9 GB 58B None None
5-500000000000000000000000000000000000000000000000000000000000000000
Wastewater surveillance of open drains for SARS-CoV-2 lineages : Maharashtra State (India) during June 2022 to May 2023 556 41.5 GB 47B 2022-06-06 2023-05-23
940000000000000000000000000000001343633069871763948645000000000000000000000000
California sewage metatranscriptomes enriched for respiratory viruses 18 27.8 GB 47B 2020-05-13 2020-07-01
9000006930000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: New Mexico State University | Food Safety Laboratory 38 16.5 GB 46B 2022-07-27 2022-11-10
130000000000000000000000000000000313985000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from CA wastewater 192 15.9 GB 42B 2021-08-06 2022-03-02
47000000000000000000002003435354717400000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance - Facility Level SARS-CoV-2 Monitoring (Ginkgo Bioworks) 12 13.3 GB 41B 2022-09-26 2023-05-31
5000000000000000000000000000000000120011052000000000000000000000000
CAGABLEA 118 41 GB 41B 2020-10-19 2021-03-23
22000000000017181922212100000000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 60 15.3 GB 38B 2022-01-17 2022-07-18
1100000000000000000000000006911991150000000000000000000000000000000000
Wisconsin wastewater lineage 271 16.4 GB 37B 2022-01-02 2023-03-09
4800000000000000000000000001121482714203417199820911300000000000000000000000000
Assessing multiplex tiling PCR sequencing approaches for detecting genomic variants of SARS-CoV-2 in municipal wastewater 106 33.6 GB 36B 2021-02-07 2021-05-14
46000000000000001045465000000000000000000000000000000000000000000000000
Coronavar, sequencing Luxembourg wastewater samples 233 21.7 GB 33B None None
5-500000000000000000000000000000000000000000000000000000000000000000
Effective Inhibitor Removal from Wastewater Samples Increases Sensitivity of RT-dPCR and Sequencing Analyses and Enhances the Stability of Wastewater-Based Surveillance 36 13.6 GB 32B None None
5-500000000000000000000000000000000000000000000000000000000000000000
Wastewater sequencing for SARS-CoV-2 59 11.8 GB 31B 2021-01-01 2021-04-27
160000000000000161415140000000000000000000000000000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune, India (December' 2023 to April'2024) 534 28.7 GB 31B 2023-12-01 2024-04-15
16100000000000000000000000000000000000000000000000012816111880470000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 77 13.4 GB 30B 2022-01-16 2022-07-13
270000000000000000000000000131138271140000000000000000000000000000000000
Validation study of covid sequencing from wastewater 150 5.7 GB 27B None None
5-500000000000000000000000000000000000000000000000000000000000000000
A pan-European study of SARS-CoV-2 variants in wastewater under the EU Sewage Sentinel System 54 17.7 GB 27B None None
5-500000000000000000000000000000000000000000000000000000000000000000
NYC Wastewater Raw Sequence Reads 311 7.9 GB 27B 2021-01-31 2022-03-21
46000000000000012151842594292333461628211000000000000000000000000000000000000000
SARS-CoV-2 genome sequencing across Autosampler, COSCa-ball and Torpedo samplers 75 10.7 GB 26B 2025-04-18 2025-04-20
750000000000000000000000000000000000000000000000000000000000000000750
GenomeTrakr wastewater project: TGen North 229 13.3 GB 25B 2021-10-04 2023-03-23
49000000000000000000000030492848240000182012758700000000000000000000000000
Wastewater sequencing using metagenomics and epicPCR 132 9.7 GB 25B 2025-04-14 2025-04-14
13200000000000000000000000000000000000000000000000000000000000000001320
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA 92 13.8 GB 24B 2020-04-07 2020-06-16
43000012433600000000000000000000000000000000000000000000000000000000000
Monitoring SARS-CoV-2 in Houston wastewater 256 14.1 GB 24B 2021-04-19 2021-11-29
3800000000000000003800000038000000000000000000000000000000000000000000
Genome Trakr wastewater project: NJDA 121 7.7 GB 24B 2022-01-11 2022-07-15
210000000000000000000000000192119141419150000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in on-campus STP : INDIA 191 14.9 GB 23B 2021-11-08 2024-04-25
220000000000000000000000047986415445321058565313378102022220000000000000
SARS-CoV-2 genome sequencing in influent wastewater and primary sludge 80 9.3 GB 23B 2025-04-16 2025-04-20
800000000000000000000000000000000000000000000000000000000000000000800
High-resolution and real-time wastewater viral surveillance by Nanopore sequencing 28 38.3 GB 22B 2025-04-14 2025-04-14
280000000000000000000000000000000000000000000000000000000000000000280
"SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater a longitudinal study in Bengaluru, India" 303 4.6 GB 21B 2022-01-03 2022-06-27
126000000000000000000000000012652918346400000000000000000000000000000000000
GenomeTrakr wastewater project: SC DHEC PHL 43 6.9 GB 21B 2023-02-14 2023-03-28
2400000000000000000000000000000000000000192400000000000000000000000000
Sequencing of SARS-CoV-2 RNA from wastewater influent samples collected in Pennsylvania for genomic surveillance 97 7.6 GB 20B 2023-06-01 2023-10-17
55000000000000000000000000000000000000000000812022550000000000000000000
GenomeTrakr Wastewater Project: Thakur Molecular Epidemiology Laboratory, NC State University 48 10 GB 19B 2022-04-04 2023-06-05
9000000000000000000000000000047201120075639100000000000000000000000
Berlin Wastewater Raw Sequence Reads, SARS-CoV-2 amplicon sequencing 62 10.6 GB 18B 2021-02-09 2022-01-13
1300000000000000713107400444630000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Raw sequence reads 192 1.1 GB 18B 2022-09-22 2023-10-19
86000000000000000000000000000000000300025004064786390000000000000000000
GenomeTrakr wastewater project: Penn State 25 7.8 GB 17B 2022-01-10 2022-06-16
8000000000000000000000000084054400000000000000000000000000000000000
Metagenomics analysis of wastewater influents from wastewater treatment facilities across Ontario 48 7.6 GB 17B 2021-11-29 2022-02-09
2600000000000000000000000118263000000000000000000000000000000000000000
Wastewater surveillance of SARS-CoV-2 in Victoria, Australia 411 2.8 GB 16B 2021-11-15 2021-12-21
2520000000000000000000000015925200000000000000000000000000000000000000000
Wastewater Surveillance 17 4.6 GB 15B 2020-11-02 2021-01-25
7000000000007640000000000000000000000000000000000000000000000000000
Wastewater ARCTIC SARS-Cov-2 sequencing 5 6.3 GB 14B 2020-12-28 2021-01-17
4000000000000140000000000000000000000000000000000000000000000000000
Pilot sequencing study for wastewater monitoring for SARS-CoV-2 (Biobot Analytics/Ginkgo Bioworks) 30 6.2 GB 14B 2020-12-27 2021-01-19
220000000000008220000000000000000000000000000000000000000000000000000
Wastewater Metagenome 216 3.7 GB 14B 2025-04-17 2025-05-05
1140000000000000000000000000000000000000000000000000000000000000000114102
Improved Robustness of SARS-CoV-2 Whole-Genome Sequencing from Wastewater with a Nonselective Virus Concentration Method 94 3.5 GB 13B 2021-10-01 2022-04-12
20000000000000000000000018111212132080000000000000000000000000000000000000
Data from SARS-CoV-2 wastewater surveillance of aircraft from China to Denmark 6 7.6 GB 11B 2023-01-12 2023-02-10
4000000000000000000000000000000000000042000000000000000000000000000
Raw sequence reads obtained from NGS of wastewater samples 79 2.7 GB 10B 2022-08-01 2022-09-29
4100000000000000000000000000000000384100000000000000000000000000000000
Detection of SARS-CoV-2 with VirCapSeq capture on wastewater metagenomic samples 6 5 GB 10B 2020-03-15 2020-07-14
5000500010000000000000000000000000000000000000000000000000000000000
Targeted amplicon sequencing of wastewater samples for detecting SARS-CoV-2 variants with high sensitivity and resolution 79 1.8 GB 10B 2021-01-27 2022-02-25
6000000000000011000124400264000000000000000000000000000000000000000
Detection of SARS-CoV-2 variants and their proportions in wastewater samples by next-generation sequencing in Finland 15 1.9 GB 8B 2021-11-08 2022-02-21
5000000000000000000000004353000000000000000000000000000000000000000
Danish SARS-CoV-2 wastewater surveillance - pilot 29 5 GB 8B 2023-06-13 2023-06-13
290000000000000000000000000000000000000000002900000000000000000000000
Wastewater Project: Rhode Island Department of Health 60 2.4 GB 8B 2022-12-07 2025-02-13
9000000000000000000000000000000000000905002320530573000000000574000
US National Wastewater Surveillance System (NWSS) wastewater project: Florida Department of Health 22 2.2 GB 8B 2023-12-31 2024-02-20
1100000000000000000000000000000000000000000000000011110000000000000000
The Impact of Viral Concentration Method on Quantification and Long Amplicon Nanopore Sequencing of SARS-CoV-2 and Noroviruses in Wastewater 63 6.5 GB 8B 2021-11-12 2021-11-14
600000000000000000000000060000000000000000000000000000000000000000000
Early Detection of SARS-CoV-2 Variants Using Genomic Surveillance: Insights from Aircraft Wastewater and Nasal Swabs at Kigali International Airport, Rwanda 59 7.2 GB 7B 2023-08-31 2024-05-31
2100000000000000000000000000000000000000000000132702115325000000000000
Norovirus genotyping in Sydney wastewater 2018-2020 108 3.2 GB 7B 2018-01-01 2020-12-01
3033333333333300000000000000000000000000000000000000000000000000000
ES SARS-CoV-2 Malawi 175 678.8 MB 7B 2020-11-30 2022-04-12
31000000000001172432113191264242221960000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance in Shenzhen during the transition from "dynamic COVID-zero" to "opening up" policy 43 1.7 GB 7B 2022-09-22 2023-01-17
2000000000000000000000000000000000060020170000000000000000000000000000
Genome sequencing of SARS-CoV-2 in wastewater confirm early arrival of omicron at Frankfurt airport but limited spread in Frankfurt city wastewater during November 2021 4 4.8 GB 7B 2021-11-04 2021-11-23
4000000000000000000000004000000000000000000000000000000000000000000
Coronastep, sequencing Luxembourg wastewater samples 97 2.9 GB 6B 2020-03-30 2021-03-04
40000220032012401858500000000000000000000000000000000000000000000000000
WISER_Mock_Community_Data 120 2.7 GB 6B 2022-02-14 2022-03-15
6000000000000000000000000000606000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing of wastewater in Oregon 5 3 GB 6B 2021-03-26 2021-04-04
3000000000000000230000000000000000000000000000000000000000000000000
SARS-CoV-2 sequencing data, generated at INAB-CERTH, and retrieved from wastewater samples 23 3.6 GB 6B 2020-05-10 2021-06-28
5000001000000103544500000000000000000000000000000000000000000000000
Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK 340 2.5 GB 6B 2020-03-30 2020-05-12
1920004819296000000000000000000000000000000000000000000000000000000000000
RBD amplicon sequencing data of SARS-CoV-2 in wastewater 217 3.6 GB 6B 2022-03-16 2023-08-08
150000000000000000000000000004121215121512151212151212121512126000000000000000000000
GenomeTrakr wastewater project: New Jersey Department of Health - Public Health and Environmental Laboratories 54 2 GB 5B 2022-01-18 2022-07-14
1600000000000000000000000005067121680000000000000000000000000000000000
Diagnostic Microbiology & Infectious Disease Rapid and sensitive detection of Sars-CoV-2 variants in nasopharyngeal swabs and wastewaters 6 2.4 GB 4B None None
5-500000000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance of pooled aircraft and airport samples from Denmark 10 2.8 GB 4B 2023-01-02 2023-02-01
8000000000000000000000000000000000000082000000000000000000000000000
Metagenomic monitoring of SARS-CoV-2 in effluents in Rio de Janeiro. 18 2.4 GB 4B None None
5-500000000000000000000000000000000000000000000000000000000000000000
Long Amplicon Nanopore Sequencing for Dual-Typing RdRp and VP1 Genes of Norovirus Genogroups I and II in Wastewater 23 3.1 GB 4B None None
5-500000000000000000000000000000000000000000000000000000000000000000
UTK SARS-CoV-2 Wastewater Surveillance 1 1.3 GB 4B 2020-10-12 2020-10-12
1000000000010000000000000000000000000000000000000000000000000000000
Olivar wastewater samples 32 938.7 MB 4B 2022-08-08 2022-08-15
160000000000000000000000000000000016000000000000000000000000000000000
GenomeTrakr wastewater project: Data of Limited Quality 10 1.5 GB 3B 2021-11-30 2021-12-21
6000000000000000000000006400000000000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in Pune city 6 3.5 GB 3B 2021-03-10 2021-03-30
5000000000000000500000000000000000000000000000000000000000000000000
Chronic Shedding of a SARS-CoV-2 Alpha Variant Lineage Q.3/Q.4 in Wastewater 17 978.9 MB 3B 2021-09-21 2023-05-15
3000000000000000000000111010110100100002232000000000000000000000000
SARS-CoV-2 wastewater genome sequencing for SASEA 49 155.1 MB 3B 2020-12-02 2021-06-23
2300000000000010238151100000000000000000000000000000000000000000000000
Wastewater SARS-CoV-2 testing at SHL 158 1 GB 3B 2023-08-21 2025-04-13
20000000000000000000000000000000000000000000002613141315102103513710132011630
First seen in local wastewater – Novel virus variants observed weeks prior to routine surveillance underscore the potential of wastewater-based epidemiology 53 1.7 GB 3B None None
5-500000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Texas Department of State Health Services 12 1.2 GB 2B 2022-01-11 2022-08-02
5000000000000000000000000050012301000000000000000000000000000000000
Wastewater-based Surveillance in Selangor Malaysia 5 2.3 GB 2B 2023-04-10 2024-04-05
3000000000000000000000000000000000000000030000000000020000000000000
SARS-CoV-2 sequencing upon wastewater filtration 12 1.2 GB 2B None None
5-500000000000000000000000000000000000000000000000000000000000000000
COVID-19 Environmental Surveillance in Karachi, Pakistan: Genome sequencing and assembly 115 1.2 GB 2B 2021-01-07 2022-01-20
2500000000000003001071217148825200000000000000000000000000000000000000000
SARS-CoV-2 Wastewater Surveillance in Norway 2022-2023 8 1 GB 2B 2023-03-27 2023-04-10
4000000000000000000000000000000000000000440000000000000000000000000
Nanopore sequencing of SARS-CoV-2 VOC B.1.1.7 from Canadian wastewater using tiled amplicons 2 857.5 MB 1B 2021-01-26 2021-01-26
2000000000000020000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: ADRDL South Dakota 13 701.1 MB 1B 2022-05-12 2023-04-26
3000000000000000000000000000001211113002010000000000000000000000000
Tracking SARS-CoV-2 variants in wastewater in San Pedro de la Paz, Chile 9 703.3 MB 1B None None
5-500000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr Project: Washington State Department of Health 5 298.7 MB 1B 2025-04-13 2025-04-13
5000000000000000000000000000000000000000000000000000000000000000050
US National Wastewater Surveillance System (NWSS) wastewater project: Pennsylvania Bureau of Labs 2 817.6 MB 1B 2023-07-03 2023-07-05
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Metatranscriptomics reveals SARS-CoV-2 mutations present in wastewater of the Frankfurt metropolitan area in Southern Germany 3 713.4 MB 821M 2020-03-04 2020-03-04
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US National Wastewater Surveillance System (NWSS) wastewater project: Philadelphia Public Health Laboratory 20 435.3 MB 803M 2024-06-26 2024-06-30
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Genomic surveillance of SARS-CoV-2 in wastewater in Gujarat, India 4 429.8 MB 748M 2020-10-22 2021-02-08
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Wastewater2021 9 301.2 MB 744M None None
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SARS-CoV-2 WGS from MO Wastewater Raw sequence reads 1 311.6 MB 622M 2021-05-03 2021-05-03
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SARS-CoV-2 on Environmental Surface 15 378.7 MB 378M 2022-03-04 2022-10-14
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Community-level SARS-CoV-2 sequence diversity revealed by wastewater sampling 30 182.5 MB 225M 2020-06-28 2021-01-31
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SARS-CoV-2 sequencing of university campus wastewater and wastewater treatment plant influent 19 136.2 MB 167M 2020-07-19 2020-09-30
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ONT Sequencing for SARS-CoV-2 in KAUST wastewater 36 114.9 MB 131M 2020-08-12 2022-09-25
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Chlorine disinfectant significantly changed microfauna habitat, community structure, and colonization mode in wastewater treatment plants during the COVID-19 pandemic 2 15.4 MB 79M None None
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Spatial distribution of soil fungal communities around Ziziphus lotus vegetation clusters in semi-arid Moroccan ecosystems 3 24.8 MB 50M 2025-04-24 2025-04-24
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Reverse-transcription loop-mediated isothermal amplification and nanopore sequencing (LAMPore) for SARS-CoV-2 wastewater-based surveillance 77 0 B 0 2020-12-22 2020-12-22
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Evaluation of sampling methods for genomic surveillance of SARS-CoV-2 variants in aircraft wastewater samples 85 0 B 0 2022-11-03 2023-01-11
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SARS-CoV-2 Whole-Genome Sequencing from Hospital Wastewater 167 0 B 0 2021-05-05 2023-09-27
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