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Acknowledgements
Sequence Read Archive SARS-CoV-2 Wastewater Submissions
Last Updated: 2026-02-18
Study Title Submission Metadata Dates Submissions Per Month Since Jan 2020
Total Submissions Sequencing File Sizes Total Bases Sequenced Earliest Submission Most Recent Submission
Wastewater monitoring for SARS-CoV-2 across the United States (CDC/NWSS/Biobot Analytics) 22969 18.5 TB 48T 2022-05-03 2023-09-15
248000000000000000000000000000002914715622312619523522824722024820423918218421780000000000000000000000000000000
Surveillance of SARS-CoV-2 genomic variants in wastewater in Switzerland 8621 5.5 TB 23T 2020-07-09 2024-11-04
387000000035511274281552111811841861911951882012152111881842071932031841481861871501831903872162372262292252133022983142942981121151281061392768810879160000000000000000
SARS-CoV-2 wastewater surveillance (Verily Life Sciences) 13373 2.8 TB 12T 2021-11-29 2026-02-12
50400000000000000000000000972931051681321171171251191141141281393293164404485045033171953203843503142723143243473363173313263183382492023312962741432302622372402743052531171341110
South Florida - Rapid Acceleration of Diagnostics: Development and Proof-of-Concept Implementation of the South Florida Miami RADx-rad 2128 4.6 TB 9T 2020-09-30 2022-12-20
23500000000012213235566797103888311113790591101152351471718150453933207813000000000000000000000000000000000000000
Biobot Analytics Wastewater Monitoring 4190 3.8 TB 9T 2021-11-17 2022-10-05
350000000000000000000000063235312416181216127300000000000000000000000000000000000000000
OHA/OSU wastewater project 4526 2.4 TB 7T 2002-04-12 2026-02-15
235000000000000000000000000000200733810218823522317693158197118233204991851911277781877233231968159134129120444110092322149587110389453270400
US National Wastewater Surveillance System (NWSS) wastewater project: Illinois Wastewater Surveillance System (IWSS) 13671 2.3 TB 7T 2021-12-01 2026-02-10
6650000000000000000000000001102454042864224905654646655464164043203873524143593683353383253544124003734333293062082161963121763211816716312814612254102481107810310167002020
wastewater genomic sequencing of SARS-CoV-2 from Quebec, Canada 2010 1.7 TB 7T 2026-02-14 2026-02-16
2.01K000000000000000000000000000000000000000000000000000000000000000000000000002.01K0
Wastewater SARS-CoV-2 surveillance at UPHL 12779 1.9 TB 5T 2021-09-23 2026-02-11
344000000000000000000000645717821421620624623329729824929324523223022616222529225029630520134422426921813726730925930520326623730123930268207242239207257266193264270276271205341331020
Wastewater monitoring of COVID in UK 23536 916.6 GB 5T 2021-10-01 2022-03-12
4.80K00000000000000000000004.07K4.72K3.98K4.80K4.61K1.36K000000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Ohio Department of Health/The Ohio State University Applied Microbiology Services Laboratory 11735 1.6 TB 4T 2021-12-19 2026-02-10
2.17K0000000000000000000000008218883641672572191902792783092682793172762723092382152372762773612852753712973412461921422762833632862893541250000000000002.17K0
WW_seq_SARS-CoV-2_SLO 614 1.4 TB 3T 2021-02-04 2023-01-31
660000000000000014433240464450664050432001212121212181260121800000000000000000000000000000000000000
Amplicon based sequencing of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) isolated from 16 wastewater catchments in Jefferson County, Kentucky USA over a multi-week period 1040 1.5 TB 3T 2019-10-11 2022-07-18
85000000000000007636785686885686885348565643240312400000000000000000000000000000000000000000000
Wastewater SARS-CoV-2 Sequencing 3419 1 TB 3T 2020-07-23 2022-02-09
3780000000319102425561242472082752972381972592142152602673781030000000000000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance System (PaWSS) SARS-CoV-2 Monitoring (Biobot Analytics) 1168 1 TB 2T 2023-01-09 2023-02-07
20000000000000000000000000000000000000120000000000000000000000000000000000000
pathogen wastewater surveillance (Verily Life Sciences/NWSS) 859 655.9 GB 2T 2026-01-22 2026-02-15
48300000000000000000000000000000000000000000000000000000000000000000000000003764830
SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads 17628 749.8 GB 2T 2021-03-08 2026-02-15
5650000000000000007240100160151165150144128137229231380361391436357439484511358467555501565484549485400476419469366386464465403450452416428221142204167193231210128161182163158152866355511251140
Wastewater monitoring for SARS-CoV-2 across the United States (HHS Protect/NWSS/Biobot Analytics) 3188 495.8 GB 1T 2021-06-07 2021-08-19
11100000000000000000026721110000000000000000000000000000000000000000000000000000000
Wastewater Surveillance for COVID-19 (AquaVitas/NWSS) 1280 624.7 GB 1T 2019-10-23 2021-06-18
6020323295145293923251316023040006000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from MO wastewater 13389 309.8 GB 1T 2021-01-06 2026-01-31
399000000000000011432573042623953163782552432902003051621331442942623063992882133082042243142842982631312623212612722472013032602352231481622672802772371731462131841001185968130163148834508200
Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater 576 402.9 GB 1T 2022-01-08 2022-12-31
600000000000000000000000000474848604848604843453645000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance, Denmark 2021-2023 5348 450.2 GB 672B 2021-10-26 2023-01-24
67100000000000000000000009957853949554867137023633123020217720228123315600000000000000000000000000000000000000
Sequencing of SARS-CoV-2 in Wastewater-Washoe County 161 289 GB 617B 2020-11-20 2021-06-20
10000000000010101001000000000000000000000000000000000000000000000000000000000
Optimised protocol for monitoring SARS-CoV-2 in wastewater using RC-PCR 1458 184.5 GB 607B 2021-06-10 2022-03-26
1.13K0000000000000000001480000007701.13K000000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Georgia Public Health Laboratory 889 270.4 GB 560B 2023-02-28 2025-07-28
8400000000000000000000000000000000000000116134107224132323220181000000000000808400000000
SARS-CoV-2 wastewater surveillance in Arkansas Metagenome 269 262.9 GB 492B 2020-12-28 2024-04-16
12000000000000184030657071289788884777128847888487988488800000000000000000000000
Wisconsin wastewater project: Wisconsin State Laboratory of Hygiene 3366 221.2 GB 488B 2022-01-10 2026-02-12
1360000000000000000000000000923312816476341567572818073756651302857759512011213683914148461221151201148110012111782263927336211727302470600
CDC NWSS - SARS-CoV-2 Wastewater Sequencing 2711 201.6 GB 482B 2014-08-01 2026-02-13
12900000000000000000000000000000000001329474254613453474764695678991071171096398101119129113842328775315248479811141087429124220
Wastewater study of severe acute respiratory syndrome coronavirus 2 in Newport Oregon 116 234.6 GB 464B 2020-06-10 2020-12-09
52000000523949273000000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 surveillance from North Carolina wastewater 1809 423.7 GB 458B 2022-08-03 2023-07-06
18900000000000000000000000000000000165179174159162128172184157189138200000000000000000000000000000000
Implementation of Genomic Wastewater Based Biosurveillance for all Communicable Infectious Diseases 111 230.3 GB 442B 2021-12-05 2022-01-09
73000000000000000000000000733800000000000000000000000000000000000000000000000000
SARS-CoV-2 sequencing in Slovak wastewaters 1126 133.6 GB 420B 2022-01-03 2022-08-31
208000000000000000000000000064129143138149972081980000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 1680 54.4 GB 345B 2020-11-24 2025-02-25
204000000000002091204522535283579792710412820000016413634323730263038203121333732303693436343436343528333635130000000000000
SARS-CoV2 variant analysis in wastewater in six Swedish cities from 2021-2022 355 202.9 GB 329B 2021-11-01 2022-12-26
39000000000000000000000001128322418153024193024393823000000000000000000000000000000000000000
Wastewater genomic sequencing for SARS-CoV-2 variants surveillance in wastewater-based epidemiology applications 76 73.2 GB 294B 2022-01-24 2022-08-14
1300000000000000000000000002137001111110000000000000000000000000000000000000000000
Data from the Danish SARS-CoV-2 wastewater surveillance 1472 169.8 GB 294B 2023-08-08 2024-08-13
290000000000000000000000000000000000000000000002892902612401820000046109550000000000000000000
Sars-CoV-2 WGS Sequencing from Wastewater samples from Toronto Pearson and Toronto, Ontario 1409 88.4 GB 277B 2018-01-03 2023-09-24
8200000000000000000000000004055707474797178757281638268779881088000000000000000000000000000000
GenomeTrakr wastewater project: Nevada State Public Health Laboratory 433 107 GB 276B 2021-09-14 2022-07-16
58000000000000000000000173230304758485254432200000000000000000000000000000000000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 652 145.5 GB 270B 2021-12-14 2022-11-29
18300000000000000000000000012183944658726553201716160000000000000000000000000000000000000000
Virginia surveillance of SARS-CoV-2 in wastewater 1618 107 GB 254B 2023-01-01 2025-01-02
960000000000000000000000000000000000000967277687241626763627080918375523849867877542165600000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: NYC DOHMH 2230 105.2 GB 248B 2024-03-03 2026-02-11
12500000000000000000000000000000000000000000000000000011912595110125111110109847596981101159497122109106000291180
SARS-CoV2 variant analysis in Swedish wastewater samples collected in 2023 1138 135.9 GB 222B 2023-05-29 2023-12-25
2830000000000000000000000000000000000000000016628866206283223194000000000000000000000000000
Sequencing of SARS-CoV-2 RNA fragments in wastewater detects the spread of new variants during major events 64 61.8 GB 210B 2021-11-12 2023-01-24
2900000000000000000000000112900001200000001200000000000000000000000000000000000000
Targeted Amplicon and Metagenomic Sequencing from Ontario Wastewater 869 48 GB 184B 2021-10-01 2022-09-18
13200000000000000000000009477111313212412912243263018000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Delaware Public Health Lab 415 105.8 GB 184B 2023-11-29 2026-01-28
116000000000000000000000000000000000000000000000001270241162424385159460000000000400001000
Wastewater metagenomics sequencing for the monitoring of SARS-CoV-2 dynamics in Rotterdam, the Netherlands 695 104.9 GB 181B 1905-07-13 2021-12-06
1160000000001832225330901169593715640076000000000000000000000000000000000000000000000000000
New York State wastewater surveillance program for SARS-CoV-2: NY Department of Health Laboratory 19127 39 GB 179B 2022-09-11 2025-07-16
939000000000000000000000000000000000460036275616786158508257429397788609108447938096608187817186424463807126285693141972953154692723100000000
A longitudinal study of sequencing SARS-CoV-2 in wastewater samples reveal the variants prevalence 129 115.2 GB 164B 2020-07-31 2022-12-09
1400000001610035411111000214888746484087000000000000000000000000000000000000000
A gold standard dataset for lineage abundance estimation from wastewater 252 162.5 GB 160B 2023-04-10 2023-04-27
252000000000000000000000000000000000000000025200000000000000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune' India 1068 50.6 GB 147B 2021-11-01 2023-05-30
1390000000000000000000000036748377878525511396665398912196085480000000000000000000000000000000000
Microbiome analysis for wastewater surveillance during COVID-19 17 68.9 GB 146B 2021-02-11 2021-04-21
60000000000000066500000000000000000000000000000000000000000000000000000000000
Wastewater-based surveillance and molecular epidemiology of SARS-CoV-2 in northern South Africa 57 17.6 GB 134B 2021-01-18 2022-05-10
1300000000000001104771340037310150000000000000000000000000000000000000000000000
Wastewater sequencing of SARS-CoV2 in Liverpool, UK 1341 24.2 GB 131B 2020-11-02 2021-06-21
3220000000000032218221714616510913463000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Health 440 47.7 GB 109B 2021-11-29 2022-10-21
6300000000000000000000000802154556263412847392200000000000000000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA (RADx-rad) 994 11 GB 108B 2021-07-19 2022-09-26
10400000000000000000002386687374781046162617168548328000000000000000000000000000000000000000000
SARS-CoV-2 Wastewater Sequencing 496 52.8 GB 104B 2020-02-29 2021-03-08
138002618610610242640404413896000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 wastewater whole genome amplicon sequencing 184 30 GB 101B 2020-11-24 2021-10-20
9400000000000201096301420943500000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Virginia Division of Consolidated Laboratory Services 79 49.8 GB 99B 2021-11-30 2022-06-29
2200000000000000000000000122414132221000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: New Jersey Department of Health 2189 66 GB 98B 2024-03-27 2026-02-09
11600000000000000000000000000000000000000000000000000011109109951111071111169395115103106688387101909697853936320
Aircraft Wastewater Surveillance - SARS-CoV-2 Monitoring (Ginkgo Bioworks) 25 36.7 GB 96B 2022-08-04 2022-09-08
1900000000000000000000000000000000196000000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance: Massachusetts State Public Health Laboratory 334 52.7 GB 93B 2023-06-13 2024-01-16
7100000000000000000000000000000000000000000040657155012583300000000000000000000000000
SARS-CoV-2 surveillance from Wake County, North Carolina wastewater 543 34.7 GB 88B 2022-08-01 2023-06-28
58000000000000000000000000000000005847515148524654454447000000000000000000000000000000000
Identifying SARS-CoV-2 VOCs in Brisbane wastewater sample 59 43.9 GB 85B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses 310 6.4 GB 84B 2021-04-06 2022-01-31
590000000000000000111154415993746261600000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Agriculture 96 45.4 GB 76B 2021-12-17 2022-06-21
21000000000000000000000000101815482120000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Massachusetts Department of Public Health 240 24.8 GB 74B 2022-01-07 2022-03-30
1000000000000000000000000002310000000000000000000000000000000000000000000000000
SARS-CoV-2 via wastewater Raw sequence reads 86 26.9 GB 66B 2020-11-30 2021-02-22
290000000000012928280000000000000000000000000000000000000000000000000000000000000
SARS-CoV2 amplicons from wastewater and synthetic 326 18.5 GB 60B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
Environmental samples Raw sequence reads 48 35.1 GB 59B 2020-09-23 2020-09-23
4800000000048000000000000000000000000000000000000000000000000000000000000000000
Wastewater metagenome of buildings (RTU) 7 49.9 GB 58B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
Wastewater surveillance of open drains for SARS-CoV-2 lineages : Maharashtra State (India) during June 2022 to May 2023 556 41.5 GB 47B 2022-06-06 2023-05-23
9400000000000000000000000000000013436330698717639486450000000000000000000000000000000000
California sewage metatranscriptomes enriched for respiratory viruses 18 27.8 GB 47B 2020-05-13 2020-07-01
90000069300000000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: New Mexico State University | Food Safety Laboratory 38 16.5 GB 46B 2022-07-27 2022-11-10
1300000000000000000000000000000003139850000000000000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from CA wastewater 192 15.9 GB 42B 2021-08-06 2022-03-02
470000000000000000000020034353547174000000000000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance - Facility Level SARS-CoV-2 Monitoring (Ginkgo Bioworks) 12 13.3 GB 41B 2022-09-26 2023-05-31
50000000000000000000000000000000001200110520000000000000000000000000000000000
CAGABLEA 118 41 GB 41B 2020-10-19 2021-03-23
220000000000171819222121000000000000000000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 60 15.3 GB 38B 2022-01-17 2022-07-18
11000000000000000000000000069119911500000000000000000000000000000000000000000000
Wisconsin wastewater lineage 271 16.4 GB 37B 2022-01-02 2023-03-09
48000000000000000000000000011214827142034171998209113000000000000000000000000000000000000
Assessing multiplex tiling PCR sequencing approaches for detecting genomic variants of SARS-CoV-2 in municipal wastewater 106 33.6 GB 36B 2021-02-07 2021-05-14
460000000000000010454650000000000000000000000000000000000000000000000000000000000
Coronavar, sequencing Luxembourg wastewater samples 233 21.7 GB 33B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
Effective Inhibitor Removal from Wastewater Samples Increases Sensitivity of RT-dPCR and Sequencing Analyses and Enhances the Stability of Wastewater-Based Surveillance 36 13.6 GB 32B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
Wastewater sequencing for SARS-CoV-2 59 11.8 GB 31B 2021-01-01 2021-04-27
1600000000000001614151400000000000000000000000000000000000000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune, India (December' 2023 to April'2024) 534 28.7 GB 31B 2023-12-01 2024-04-15
161000000000000000000000000000000000000000000000000128161118804700000000000000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 77 13.4 GB 30B 2022-01-16 2022-07-13
2700000000000000000000000001311382711400000000000000000000000000000000000000000000
CDC's Traveler-Based Genomic Surveillance Program 10 9.2 GB 27B 2026-01-22 2026-02-12
50000000000000000000000000000000000000000000000000000000000000000000000000550
Validation study of covid sequencing from wastewater 150 5.7 GB 27B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
A pan-European study of SARS-CoV-2 variants in wastewater under the EU Sewage Sentinel System 54 17.7 GB 27B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
NYC Wastewater Raw Sequence Reads 311 7.9 GB 27B 2021-01-31 2022-03-21
460000000000000121518425942923334616282110000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: TGen North 229 13.3 GB 25B 2021-10-04 2023-03-23
490000000000000000000000304928482400001820127587000000000000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA 92 13.8 GB 24B 2020-04-07 2020-06-16
430000124336000000000000000000000000000000000000000000000000000000000000000000000
Monitoring SARS-CoV-2 in Houston wastewater 256 14.1 GB 24B 2021-04-19 2021-11-29
38000000000000000038000000380000000000000000000000000000000000000000000000000000
Genome Trakr wastewater project: NJDA 121 7.7 GB 24B 2022-01-11 2022-07-15
2100000000000000000000000001921191414191500000000000000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in on-campus STP : INDIA 191 14.9 GB 23B 2021-11-08 2024-04-25
2200000000000000000000000479864154453210585653133781020222200000000000000000000000
"SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater a longitudinal study in Bengaluru, India" 303 4.6 GB 21B 2022-01-03 2022-06-27
1260000000000000000000000000126529183464000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: SC DHEC PHL 43 6.9 GB 21B 2023-02-14 2023-03-28
24000000000000000000000000000000000000001924000000000000000000000000000000000000
NWSS Wastewater Project: North Carolina State Laboratory of Public Health 47 6.5 GB 21B 2026-01-29 2026-01-29
4700000000000000000000000000000000000000000000000000000000000000000000000004700
Sequencing of SARS-CoV-2 RNA from wastewater influent samples collected in Pennsylvania for genomic surveillance 97 7.6 GB 20B 2023-06-01 2023-10-17
550000000000000000000000000000000000000000008120225500000000000000000000000000000
GenomeTrakr Wastewater Project: Thakur Molecular Epidemiology Laboratory, NC State University 48 10 GB 19B 2022-04-04 2023-06-05
90000000000000000000000000000472011200756391000000000000000000000000000000000
Berlin Wastewater Raw Sequence Reads, SARS-CoV-2 amplicon sequencing 62 10.6 GB 18B 2021-02-09 2022-01-13
13000000000000007131074004446300000000000000000000000000000000000000000000000000
Wastewater Metagenome 178 6.4 GB 18B 2026-01-26 2026-02-16
96000000000000000000000000000000000000000000000000000000000000000000000000096820
Severe acute respiratory syndrome coronavirus 2 Raw sequence reads 192 1.1 GB 18B 2022-09-22 2023-10-19
860000000000000000000000000000000003000250040647863900000000000000000000000000000
GenomeTrakr wastewater project: Penn State 25 7.8 GB 17B 2022-01-10 2022-06-16
80000000000000000000000000840544000000000000000000000000000000000000000000000
Metagenomics analysis of wastewater influents from wastewater treatment facilities across Ontario 48 7.6 GB 17B 2021-11-29 2022-02-09
26000000000000000000000001182630000000000000000000000000000000000000000000000000
Wastewater surveillance of SARS-CoV-2 in Victoria, Australia 411 2.8 GB 16B 2021-11-15 2021-12-21
25200000000000000000000000159252000000000000000000000000000000000000000000000000000
Wastewater Surveillance 17 4.6 GB 15B 2020-11-02 2021-01-25
70000000000076400000000000000000000000000000000000000000000000000000000000000
Wastewater ARCTIC SARS-Cov-2 sequencing 5 6.3 GB 14B 2020-12-28 2021-01-17
40000000000001400000000000000000000000000000000000000000000000000000000000000
Pilot sequencing study for wastewater monitoring for SARS-CoV-2 (Biobot Analytics/Ginkgo Bioworks) 30 6.2 GB 14B 2020-12-27 2021-01-19
2200000000000082200000000000000000000000000000000000000000000000000000000000000
Improved Robustness of SARS-CoV-2 Whole-Genome Sequencing from Wastewater with a Nonselective Virus Concentration Method 94 3.5 GB 13B 2021-10-01 2022-04-12
200000000000000000000000181112121320800000000000000000000000000000000000000000000000
Data from SARS-CoV-2 wastewater surveillance of aircraft from China to Denmark 6 7.6 GB 11B 2023-01-12 2023-02-10
40000000000000000000000000000000000000420000000000000000000000000000000000000
Raw sequence reads obtained from NGS of wastewater samples 79 2.7 GB 10B 2022-08-01 2022-09-29
41000000000000000000000000000000003841000000000000000000000000000000000000000000
Detection of SARS-CoV-2 with VirCapSeq capture on wastewater metagenomic samples 6 5 GB 10B 2020-03-15 2020-07-14
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Targeted amplicon sequencing of wastewater samples for detecting SARS-CoV-2 variants with high sensitivity and resolution 79 1.8 GB 10B 2021-01-27 2022-02-25
60000000000000110001244002640000000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Philadelphia Public Health Laboratory 384 3.1 GB 9B 2024-06-26 2026-01-22
6000000000000000000000000000000000000000000000000000000020363636041260562032004800006000
Detection of SARS-CoV-2 variants and their proportions in wastewater samples by next-generation sequencing in Finland 15 1.9 GB 8B 2021-11-08 2022-02-21
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US National Wastewater Surveillance System (NWSS) wastewater project: NH Public Health Laboratories 897 2.6 GB 8B 2020-12-01 2026-02-11
910000000000002500000391400000000000000000000000000000000000000050395654636258254153695259310910
Danish SARS-CoV-2 wastewater surveillance - pilot 29 5 GB 8B 2023-06-13 2023-06-13
2900000000000000000000000000000000000000000029000000000000000000000000000000000
Wastewater Project: Rhode Island Department of Health 60 2.4 GB 8B 2022-12-07 2025-02-13
90000000000000000000000000000000000009050023205305730000000005740000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Florida Department of Health 22 2.2 GB 8B 2023-12-31 2024-02-20
11000000000000000000000000000000000000000000000000111100000000000000000000000000
The Impact of Viral Concentration Method on Quantification and Long Amplicon Nanopore Sequencing of SARS-CoV-2 and Noroviruses in Wastewater 63 6.5 GB 8B 2021-11-12 2021-11-14
6000000000000000000000000600000000000000000000000000000000000000000000000000000
Early Detection of SARS-CoV-2 Variants Using Genomic Surveillance: Insights from Aircraft Wastewater and Nasal Swabs at Kigali International Airport, Rwanda 59 7.2 GB 7B 2023-08-31 2024-05-31
21000000000000000000000000000000000000000000001327021153250000000000000000000000
Norovirus genotyping in Sydney wastewater 2018-2020 108 3.2 GB 7B 2018-01-01 2020-12-01
30333333333333000000000000000000000000000000000000000000000000000000000000000
ES SARS-CoV-2 Malawi 175 678.8 MB 7B 2020-11-30 2022-04-12
310000000000011724321131912642422219600000000000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance in Shenzhen during the transition from "dynamic COVID-zero" to "opening up" policy 43 1.7 GB 7B 2022-09-22 2023-01-17
20000000000000000000000000000000000600201700000000000000000000000000000000000000
Genome sequencing of SARS-CoV-2 in wastewater confirm early arrival of omicron at Frankfurt airport but limited spread in Frankfurt city wastewater during November 2021 4 4.8 GB 7B 2021-11-04 2021-11-23
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Coronastep, sequencing Luxembourg wastewater samples 97 2.9 GB 6B 2020-03-30 2021-03-04
400002200320124018585000000000000000000000000000000000000000000000000000000000000
WISER_Mock_Community_Data 120 2.7 GB 6B 2022-02-14 2022-03-15
60000000000000000000000000006060000000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing of wastewater in Oregon 5 3 GB 6B 2021-03-26 2021-04-04
30000000000000002300000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 sequencing data, generated at INAB-CERTH, and retrieved from wastewater samples 23 3.6 GB 6B 2020-05-10 2021-06-28
50000010000001035445000000000000000000000000000000000000000000000000000000000
Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK 340 2.5 GB 6B 2020-03-30 2020-05-12
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RBD amplicon sequencing data of SARS-CoV-2 in wastewater 217 3.6 GB 6B 2022-03-16 2023-08-08
1500000000000000000000000000041212151215121512121512121215121260000000000000000000000000000000
GenomeTrakr wastewater project: New Jersey Department of Health - Public Health and Environmental Laboratories 54 2 GB 5B 2022-01-18 2022-07-14
16000000000000000000000000050671216800000000000000000000000000000000000000000000
Diagnostic Microbiology & Infectious Disease Rapid and sensitive detection of Sars-CoV-2 variants in nasopharyngeal swabs and wastewaters 6 2.4 GB 4B None None
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SARS-CoV-2 wastewater surveillance of pooled aircraft and airport samples from Denmark 10 2.8 GB 4B 2023-01-02 2023-02-01
80000000000000000000000000000000000000820000000000000000000000000000000000000
Metagenomic monitoring of SARS-CoV-2 in effluents in Rio de Janeiro. 18 2.4 GB 4B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
Long Amplicon Nanopore Sequencing for Dual-Typing RdRp and VP1 Genes of Norovirus Genogroups I and II in Wastewater 23 3.1 GB 4B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
UTK SARS-CoV-2 Wastewater Surveillance 1 1.3 GB 4B 2020-10-12 2020-10-12
10000000000100000000000000000000000000000000000000000000000000000000000000000
Olivar wastewater samples 32 938.7 MB 4B 2022-08-08 2022-08-15
1600000000000000000000000000000000160000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Data of Limited Quality 10 1.5 GB 3B 2021-11-30 2021-12-21
60000000000000000000000064000000000000000000000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in Pune city 6 3.5 GB 3B 2021-03-10 2021-03-30
50000000000000005000000000000000000000000000000000000000000000000000000000000
Chronic Shedding of a SARS-CoV-2 Alpha Variant Lineage Q.3/Q.4 in Wastewater 17 978.9 MB 3B 2021-09-21 2023-05-15
30000000000000000000001110101101001000022320000000000000000000000000000000000
SARS-CoV-2 wastewater genome sequencing for SASEA 49 155.1 MB 3B 2020-12-02 2021-06-23
23000000000000102381511000000000000000000000000000000000000000000000000000000000
First seen in local wastewater – Novel virus variants observed weeks prior to routine surveillance underscore the potential of wastewater-based epidemiology 53 1.7 GB 3B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Texas Department of State Health Services 12 1.2 GB 2B 2022-01-11 2022-08-02
50000000000000000000000000500123010000000000000000000000000000000000000000000
Wastewater-based Surveillance in Selangor Malaysia 40 2.3 GB 2B 2023-04-10 2024-04-05
16000000000000000000000000000000000000000080000000001216400000000000000000000000
SARS-CoV-2 sequencing upon wastewater filtration 12 1.2 GB 2B None None
5-5000000000000000000000000000000000000000000000000000000000000000000000000000
COVID-19 Environmental Surveillance in Karachi, Pakistan: Genome sequencing and assembly 115 1.2 GB 2B 2021-01-07 2022-01-20
25000000000000030010712171488252000000000000000000000000000000000000000000000000000
SARS-CoV-2 Wastewater Surveillance in Norway 2022-2023 8 1 GB 2B 2023-03-27 2023-04-10
40000000000000000000000000000000000000004400000000000000000000000000000000000
Nanopore sequencing of SARS-CoV-2 VOC B.1.1.7 from Canadian wastewater using tiled amplicons 2 857.5 MB 1B 2021-01-26 2021-01-26
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GenomeTrakr wastewater project: ADRDL South Dakota 13 701.1 MB 1B 2022-05-12 2023-04-26
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Tracking SARS-CoV-2 variants in wastewater in San Pedro de la Paz, Chile 9 703.3 MB 1B None None
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Wastewater SARS-CoV-2 testing at SHL 163 464.2 MB 1B 2023-08-21 2025-05-19
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US National Wastewater Surveillance System (NWSS) wastewater project: Pennsylvania Bureau of Labs 2 817.6 MB 1B 2023-07-03 2023-07-05
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Metatranscriptomics reveals SARS-CoV-2 mutations present in wastewater of the Frankfurt metropolitan area in Southern Germany 3 713.4 MB 821M 2020-03-04 2020-03-04
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Genomic surveillance of SARS-CoV-2 in wastewater in Gujarat, India 4 429.8 MB 748M 2020-10-22 2021-02-08
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Wastewater2021 9 301.2 MB 744M None None
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SARS-CoV-2 WGS from MO Wastewater Raw sequence reads 1 311.6 MB 622M 2021-05-03 2021-05-03
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Multi-stage oxic biofilm system 6 473.9 MB 607M 2026-01-19 2026-01-19
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SARS-CoV-2 on Environmental Surface 15 378.7 MB 378M 2022-03-04 2022-10-14
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Community-level SARS-CoV-2 sequence diversity revealed by wastewater sampling 30 182.5 MB 225M 2020-06-28 2021-01-31
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SARS-CoV-2 sequencing of university campus wastewater and wastewater treatment plant influent 19 136.2 MB 167M 2020-07-19 2020-09-30
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ONT Sequencing for SARS-CoV-2 in KAUST wastewater 36 114.9 MB 131M 2020-08-12 2022-09-25
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Chlorine disinfectant significantly changed microfauna habitat, community structure, and colonization mode in wastewater treatment plants during the COVID-19 pandemic 2 15.4 MB 79M None None
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US National Wastewater Surveillance System (NWSS) wastewater project: Kansas Health and Environment Laboratory 482 0 B 2M 2023-11-27 2026-02-16
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Metagenomes of SARS-CoV-2 in wastewater samples from a city in arid Patagonia 2 0 B 0 2020-10-07 2022-01-06
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Evaluation of sampling methods for genomic surveillance of SARS-CoV-2 variants in aircraft wastewater samples 85 0 B 0 2022-11-03 2023-01-11
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Whole genome sequences of SARS-CoV-2 from wastewater samples in Arizona 9 0 B 0 2022-10-11 2023-02-06
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Monitoring the Evolution of SARS-CoV-2 Variants through Wastewater Analysis 41 0 B 0 2023-08-09 2024-07-01
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Wastewater Raw sequence reads for SARS-CoV-2 946 0 B 0 2021-12-16 2024-04-06
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Reverse-transcription loop-mediated isothermal amplification and nanopore sequencing (LAMPore) for SARS-CoV-2 wastewater-based surveillance 77 0 B 0 2020-12-22 2020-12-22
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Systematic evaluation of tangential-flow ultrafiltration and Nanotrap microbiome particles for sequencing wastewater RNA virome 110 0 B 0 2022-02-15 2023-04-06
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SARS-CoV-2 wastewater sequencing data 116 0 B 0 2024-01-02 2025-05-14
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SARS-CoV-2 Whole-Genome Sequencing from Hospital Wastewater 167 0 B 0 2021-05-05 2023-09-27
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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa, a highly diverged BA.2-related lineage 29 0 B 0 2023-08-22 2023-11-14
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SARS-CoV-2 Wastewater-based Genomic Epidemiology (WGE) in Japan 21 0 B 0 2023-02-01 2023-11-15
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Assessment of RNA quality from airplane wastewater 30 0 B 0 None None
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16S analysis of university dormitory raw wastewater samples, collected during the COVID-19 Pandemic. 173 0 B 0 None None
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SARS-CoV-2 Wastewater Surveillance in Southern Nevada 1385 0 B 0 2021-09-06 2023-10-30
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Identification of SARS-CoV-2 variants by MiSeq sequencing in sewers using passive sampling. 49 0 B 0 2022-02-15 2022-05-22
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SARS-CoV-2 Raw sequence reads 21 0 B 0 2023-02-19 2023-02-21
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SARS-CoV-2 wastewater surveillance in Northern Ireland, 2021-2023 4221 0 B 0 2021-11-15 2023-03-09
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SARS-CoV-2 genome sequencing in influent wastewater and primary sludge 80 0 B 0 2022-04-02 2023-12-17
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Wastewater based genomic surveillance of SARS-CoV-2 throughout Germany 231 0 B 0 2023-01-02 2023-04-30
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High-resolution and real-time wastewater viral surveillance by Nanopore sequencing 28 0 B 0 2022-10-02 2023-04-16
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Wastewater based surveillance revealed temporal dynamics of gut microbiota and virome during the COVID-19 pandemic 36 0 B 0 2022-12-08 2023-01-05
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Tiled-amplicon sequencing of SARS-CoV-2 from Dutch wastewater samples 17405 0 B 0 2021-04-09 2023-12-31
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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa 10 0 B 0 2023-09-20 2023-12-12
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Wastewater based SARS-CoV-2 genomic surveillance in Ethiopia 79 0 B 0 2023-02-23 2023-08-17
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SARS-CoV-2 genome sequencing across Autosampler, COSCa-ball and Torpedo samplers 75 0 B 0 2023-03-14 2023-05-04
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DISCLAIMER: The raw data published on this dashboard has been obtained from deidentified and aggregated materials collected in accordance with the law and ethical guidelines governing the research studies. This data is made available for informational purposes only. This data set has not been independently verified, validated, or peer reviewed. It may contain errors, omissions, or artifacts inherent to the methods used in data collection and processing and is provided as is without any warranty of accuracy or completeness.

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