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Acknowledgements
Sequence Read Archive SARS-CoV-2 Wastewater Submissions
Last Updated: 2025-08-27
Study Title Submission Metadata Dates Submissions Per Month Since Jan 2020
Total Submissions Sequencing File Sizes Total Bases Sequenced Earliest Submission Most Recent Submission
Wastewater monitoring for SARS-CoV-2 across the United States (CDC/NWSS/Biobot Analytics) 22969 18.5 TB 48T 2022-05-03 2023-09-15
2480000000000000000000000000000029147156223126195235228247220248204239182184217800000000000000000000000000
Surveillance of SARS-CoV-2 genomic variants in wastewater in Switzerland 8621 5.5 TB 23T 2020-07-09 2024-11-04
3870000000355112742815521118118418619119518820121521118818420719320318414818618715018319038721623722622922521330229831429429811211512810613927688108791600000000000
SARS-CoV-2 wastewater surveillance (Verily Life Sciences) 11805 3 TB 12T 2021-11-29 2025-08-22
504000000000000000000000009729310516813211711712511911411412813932931644044850450331719532038435031427231432434733631733132631833824920233129627414323014717118000
South Florida - Rapid Acceleration of Diagnostics: Development and Proof-of-Concept Implementation of the South Florida Miami RADx-rad 2128 4.6 TB 9T 2020-09-30 2022-12-20
235000000000122132355667971038883111137905911011523514717181504539332078130000000000000000000000000000000000
Biobot Analytics Wastewater Monitoring 4190 3.8 TB 9T 2021-11-17 2022-10-05
3500000000000000000000000632353124161812161273000000000000000000000000000000000000
OHA/OSU wastewater project 4185 2.4 TB 7T 2002-04-12 2025-08-23
2350000000000000000000000000002007338102188235223176931581971182332049918519112777818772332319671281341291204441100923221480449300
US National Wastewater Surveillance System (NWSS) wastewater project: Illinois Wastewater Surveillance System (IWSS) 12244 2.3 TB 7T 2021-12-01 2025-08-01
6650000000000000000000000001102444032864224905644636655464164043203873524143593683353383253544124003734333293062082161963121763211816500000000300
Wastewater SARS-CoV-2 surveillance at UPHL 11381 1.9 TB 5T 2021-09-23 2025-08-26
34400000000000000000000064571782142162062462332972982492932452322302261622252922502963052013442242692181372673092593052032662373012393026820724223920725726606429900
Wastewater monitoring of COVID in UK 23536 916.6 GB 5T 2021-10-01 2022-03-12
4.80K00000000000000000000004.07K4.72K3.98K4.80K4.61K1.36K0000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Ohio Department of Health/The Ohio State University Applied Microbiology Services Laboratory 9224 1.6 TB 4T 2021-12-19 2024-12-23
3710000000000000000000000008218883641672572191902792783092682793172762723092382152372762773612852753712973412461921422762833632862132130000000000
WW_seq_SARS-CoV-2_SLO 614 1.4 TB 3T 2021-02-04 2023-01-31
6600000000000000144332404644506640504320012121212121812601218000000000000000000000000000000000
Amplicon based sequencing of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) isolated from 16 wastewater catchments in Jefferson County, Kentucky USA over a multi-week period 1040 1.5 TB 3T 2019-10-11 2022-07-18
850000000000000076367856868856868853485656432403124000000000000000000000000000000000000000
Wastewater SARS-CoV-2 Sequencing 3419 1 TB 3T 2020-07-23 2022-02-09
37800000003191024255612424720827529723819725921421526026737810300000000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance System (PaWSS) SARS-CoV-2 Monitoring (Biobot Analytics) 1168 1 TB 2T 2023-01-09 2023-02-07
200000000000000000000000000000000000001200000000000000000000000000000000
pathogen wastewater surveillance (Verily Life Sciences/NWSS) 993 665.3 GB 2T 2025-07-20 2025-08-22
605000000000000000000000000000000000000000000000000000000000000000000038860500
SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads 15408 750.8 GB 2T 2021-03-08 2025-08-26
56500000000000000072401001601511651501441281372292313803613914363574394845113584675555015654845494854004764194693663834634654034503761000023193231210128161182399114700
Wastewater monitoring for SARS-CoV-2 across the United States (HHS Protect/NWSS/Biobot Analytics) 3188 495.8 GB 1T 2021-06-07 2021-08-19
111000000000000000000267211100000000000000000000000000000000000000000000000000
Wastewater Surveillance for COVID-19 (AquaVitas/NWSS) 1280 624.7 GB 1T 2019-10-23 2021-06-18
60203232951452939232513160230400060000000000000000000000000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from MO wastewater 12762 309.7 GB 1T 2021-01-06 2025-08-04
39900000000000001143257304262395316378255243290200305162133144294262306399288213308204224314284298263131262321261272247201303260235223148162267280277237173146213184100118592706800
Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater 576 402.9 GB 1T 2022-01-08 2022-12-31
6000000000000000000000000004748486048486048434536450000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance, Denmark 2021-2023 5348 450.2 GB 672B 2021-10-26 2023-01-24
671000000000000000000000099578539495548671370236331230202177202281233156000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Georgia Public Health Laboratory 805 295.9 GB 640B 2023-02-28 2025-07-22
8000000000000000000000000000000000000000116134107224132323220181000000000000080000
Sequencing of SARS-CoV-2 in Wastewater-Washoe County 161 289 GB 617B 2020-11-20 2021-06-20
100000000000101010010000000000000000000000000000000000000000000000000000
Optimised protocol for monitoring SARS-CoV-2 in wastewater using RC-PCR 1458 184.5 GB 607B 2021-06-10 2022-03-26
1.13K0000000000000000001480000007701.13K0000000000000000000000000000000000000000000
CDC NWSS - SARS-CoV-2 Wastewater Sequencing 2388 209.8 GB 507B 2014-08-01 2025-08-26
12900000000000000000000000000000000001329474254613453474764695678991071171096398101119129113842328775315248403310200
SARS-CoV-2 wastewater surveillance in Arkansas Metagenome 269 262.9 GB 492B 2020-12-28 2024-04-16
120000000000001840306570712897888847771288478884879884888000000000000000000
Wastewater Raw sequence reads for SARS-CoV-2 946 114.1 GB 485B 2025-08-15 2025-08-15
9460000000000000000000000000000000000000000000000000000000000000000000094600
Wisconsin wastewater project: Wisconsin State Laboratory of Hygiene 2975 216 GB 477B 2022-01-10 2025-08-14
136000000000000000000000000092331281647634156757281807375665130285775951201121368391414846122115120114811001211178026190192000
Wastewater study of severe acute respiratory syndrome coronavirus 2 in Newport Oregon 116 234.6 GB 464B 2020-06-10 2020-12-09
520000005239492730000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 surveillance from North Carolina wastewater 1809 423.7 GB 458B 2022-08-03 2023-07-06
189000000000000000000000000000000001651791741591621281721841571891382000000000000000000000000000
Implementation of Genomic Wastewater Based Biosurveillance for all Communicable Infectious Diseases 111 230.3 GB 442B 2021-12-05 2022-01-09
730000000000000000000000007338000000000000000000000000000000000000000000000
SARS-CoV-2 sequencing in Slovak wastewaters 1126 133.6 GB 420B 2022-01-03 2022-08-31
2080000000000000000000000000641291431381499720819800000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 1680 54.4 GB 345B 2020-11-24 2025-02-25
2040000000000020912045225352835797927104128200000164136343237302630382031213337323036934363434363435283336351300000000
SARS-CoV2 variant analysis in wastewater in six Swedish cities from 2021-2022 355 202.9 GB 329B 2021-11-01 2022-12-26
390000000000000000000000011283224181530241930243938230000000000000000000000000000000000
Wastewater genomic sequencing for SARS-CoV-2 variants surveillance in wastewater-based epidemiology applications 76 73.2 GB 294B 2022-01-24 2022-08-14
13000000000000000000000000021370011111100000000000000000000000000000000000000
Data from the Danish SARS-CoV-2 wastewater surveillance 1472 169.8 GB 294B 2023-08-08 2024-08-13
2900000000000000000000000000000000000000000000028929026124018200000461095500000000000000
Sars-CoV-2 WGS Sequencing from Wastewater samples from Toronto Pearson and Toronto, Ontario 1409 88.4 GB 277B 2018-01-03 2023-09-24
82000000000000000000000000040557074747971787572816382687798810880000000000000000000000000
GenomeTrakr wastewater project: Nevada State Public Health Laboratory 433 107 GB 276B 2021-09-14 2022-07-16
580000000000000000000001732303047584852544322000000000000000000000000000000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 652 145.5 GB 270B 2021-12-14 2022-11-29
183000000000000000000000000121839446587265532017161600000000000000000000000000000000000
Virginia surveillance of SARS-CoV-2 in wastewater 1618 107 GB 254B 2023-01-01 2025-01-02
9600000000000000000000000000000000000009672776872416267636270809183755238498678775421656000000000
US National Wastewater Surveillance System (NWSS) wastewater project: NYC DOHMH 1828 99.2 GB 240B 2024-03-03 2025-08-22
12500000000000000000000000000000000000000000000000000011912595110125111110109847596981101159414684100
SARS-CoV2 variant analysis in Swedish wastewater samples collected in 2023 1138 135.9 GB 222B 2023-05-29 2023-12-25
28300000000000000000000000000000000000000000166288662062832231940000000000000000000000
Sequencing of SARS-CoV-2 RNA fragments in wastewater detects the spread of new variants during major events 64 61.8 GB 210B 2021-11-12 2023-01-24
29000000000000000000000001129000012000000012000000000000000000000000000000000
Targeted Amplicon and Metagenomic Sequencing from Ontario Wastewater 869 48 GB 184B 2021-10-01 2022-09-18
132000000000000000000000094771113132124129122432630180000000000000000000000000000000000000
Wastewater metagenomics sequencing for the monitoring of SARS-CoV-2 dynamics in Rotterdam, the Netherlands 695 104.9 GB 181B 1905-07-13 2021-12-06
11600000000018322253309011695937156400760000000000000000000000000000000000000000000000
New York State wastewater surveillance program for SARS-CoV-2: NY Department of Health Laboratory 16788 39 GB 179B 2022-09-11 2024-12-31
939000000000000000000000000000000000460036275616786158508257429397788606748447938096608187817186424463797126273610000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Delaware Public Health Lab 401 102.4 GB 174B 2023-11-29 2024-09-11
116000000000000000000000000000000000000000000000001270241162424385159460000000000000
CDC's Traveler-Based Genomic Surveillance Program 71 63.3 GB 169B 2025-07-18 2025-08-22
600000000000000000000000000000000000000000000000000000000000000000000116000
A longitudinal study of sequencing SARS-CoV-2 in wastewater samples reveal the variants prevalence 129 115.2 GB 164B 2020-07-31 2022-12-09
14000000016100354111110002148887464840870000000000000000000000000000000000
A gold standard dataset for lineage abundance estimation from wastewater 252 162.5 GB 160B 2023-04-10 2023-04-27
2520000000000000000000000000000000000000000252000000000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune' India 1068 50.6 GB 147B 2021-11-01 2023-05-30
13900000000000000000000000367483778785255113966653989121960854800000000000000000000000000000
Microbiome analysis for wastewater surveillance during COVID-19 17 68.9 GB 146B 2021-02-11 2021-04-21
600000000000000665000000000000000000000000000000000000000000000000000000
Wastewater-based surveillance and molecular epidemiology of SARS-CoV-2 in northern South Africa 57 17.6 GB 134B 2021-01-18 2022-05-10
13000000000000011047713400373101500000000000000000000000000000000000000000
Wastewater sequencing of SARS-CoV2 in Liverpool, UK 1341 24.2 GB 131B 2020-11-02 2021-06-21
32200000000000322182217146165109134630000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Health 440 47.7 GB 109B 2021-11-29 2022-10-21
63000000000000000000000008021545562634128473922000000000000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA (RADx-rad) 994 11 GB 108B 2021-07-19 2022-09-26
104000000000000000000023866873747810461626171685483280000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: New Jersey Department of Health 1669 68.2 GB 105B 2024-03-27 2025-08-22
11600000000000000000000000000000000000000000000000000011109109951111071111169395115103106688322419600
SARS-CoV-2 Wastewater Sequencing 496 52.8 GB 104B 2020-02-29 2021-03-08
1380026186106102426404044138960000000000000000000000000000000000000000000000000000000
SARS-CoV-2 wastewater whole genome amplicon sequencing 184 30 GB 101B 2020-11-24 2021-10-20
94000000000002010963014209435000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Virginia Division of Consolidated Laboratory Services 79 49.8 GB 99B 2021-11-30 2022-06-29
22000000000000000000000001224141322210000000000000000000000000000000000000000
Aircraft Wastewater Surveillance - SARS-CoV-2 Monitoring (Ginkgo Bioworks) 25 36.7 GB 96B 2022-08-04 2022-09-08
19000000000000000000000000000000001960000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance: Massachusetts State Public Health Laboratory 334 52.7 GB 93B 2023-06-13 2024-01-16
71000000000000000000000000000000000000000000406571550125833000000000000000000000
SARS-CoV-2 surveillance from Wake County, North Carolina wastewater 543 34.7 GB 88B 2022-08-01 2023-06-28
580000000000000000000000000000000058475151485246544544470000000000000000000000000000
Identifying SARS-CoV-2 VOCs in Brisbane wastewater sample 59 43.9 GB 85B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses 310 6.4 GB 84B 2021-04-06 2022-01-31
5900000000000000001111544159937462616000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Agriculture 96 45.4 GB 76B 2021-12-17 2022-06-21
210000000000000000000000001018154821200000000000000000000000000000000000000000
GenomeTrakr wastewater project: Massachusetts Department of Public Health 240 24.8 GB 74B 2022-01-07 2022-03-30
10000000000000000000000000023100000000000000000000000000000000000000000000
SARS-CoV-2 via wastewater Raw sequence reads 86 26.9 GB 66B 2020-11-30 2021-02-22
2900000000000129282800000000000000000000000000000000000000000000000000000000
SARS-CoV2 amplicons from wastewater and synthetic 326 18.5 GB 60B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
Environmental samples Raw sequence reads 48 35.1 GB 59B 2020-09-23 2020-09-23
48000000000480000000000000000000000000000000000000000000000000000000000000
Wastewater metagenome of buildings (RTU) 7 49.9 GB 58B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
Wastewater surveillance of open drains for SARS-CoV-2 lineages : Maharashtra State (India) during June 2022 to May 2023 556 41.5 GB 47B 2022-06-06 2023-05-23
94000000000000000000000000000000134363306987176394864500000000000000000000000000000
California sewage metatranscriptomes enriched for respiratory viruses 18 27.8 GB 47B 2020-05-13 2020-07-01
900000693000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: New Mexico State University | Food Safety Laboratory 38 16.5 GB 46B 2022-07-27 2022-11-10
13000000000000000000000000000000031398500000000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from CA wastewater 192 15.9 GB 42B 2021-08-06 2022-03-02
4700000000000000000000200343535471740000000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance - Facility Level SARS-CoV-2 Monitoring (Ginkgo Bioworks) 12 13.3 GB 41B 2022-09-26 2023-05-31
500000000000000000000000000000000012001105200000000000000000000000000000
CAGABLEA 118 41 GB 41B 2020-10-19 2021-03-23
2200000000001718192221210000000000000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 60 15.3 GB 38B 2022-01-17 2022-07-18
110000000000000000000000000691199115000000000000000000000000000000000000000
Wisconsin wastewater lineage 271 16.4 GB 37B 2022-01-02 2023-03-09
480000000000000000000000000112148271420341719982091130000000000000000000000000000000
Assessing multiplex tiling PCR sequencing approaches for detecting genomic variants of SARS-CoV-2 in municipal wastewater 106 33.6 GB 36B 2021-02-07 2021-05-14
4600000000000000104546500000000000000000000000000000000000000000000000000000
Coronavar, sequencing Luxembourg wastewater samples 233 21.7 GB 33B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
Effective Inhibitor Removal from Wastewater Samples Increases Sensitivity of RT-dPCR and Sequencing Analyses and Enhances the Stability of Wastewater-Based Surveillance 36 13.6 GB 32B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
Wastewater sequencing for SARS-CoV-2 59 11.8 GB 31B 2021-01-01 2021-04-27
16000000000000016141514000000000000000000000000000000000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune, India (December' 2023 to April'2024) 534 28.7 GB 31B 2023-12-01 2024-04-15
1610000000000000000000000000000000000000000000000001281611188047000000000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 77 13.4 GB 30B 2022-01-16 2022-07-13
27000000000000000000000000013113827114000000000000000000000000000000000000000
Validation study of covid sequencing from wastewater 150 5.7 GB 27B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
A pan-European study of SARS-CoV-2 variants in wastewater under the EU Sewage Sentinel System 54 17.7 GB 27B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
NYC Wastewater Raw Sequence Reads 311 7.9 GB 27B 2021-01-31 2022-03-21
4600000000000001215184259429233346162821100000000000000000000000000000000000000000000
GenomeTrakr wastewater project: TGen North 229 13.3 GB 25B 2021-10-04 2023-03-23
4900000000000000000000003049284824000018201275870000000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA 92 13.8 GB 24B 2020-04-07 2020-06-16
4300001243360000000000000000000000000000000000000000000000000000000000000000
Monitoring SARS-CoV-2 in Houston wastewater 256 14.1 GB 24B 2021-04-19 2021-11-29
380000000000000000380000003800000000000000000000000000000000000000000000000
Genome Trakr wastewater project: NJDA 121 7.7 GB 24B 2022-01-11 2022-07-15
21000000000000000000000000019211914141915000000000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in on-campus STP : INDIA 191 14.9 GB 23B 2021-11-08 2024-04-25
22000000000000000000000004798641544532105856531337810202222000000000000000000
"SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater a longitudinal study in Bengaluru, India" 303 4.6 GB 21B 2022-01-03 2022-06-27
12600000000000000000000000001265291834640000000000000000000000000000000000000000
GenomeTrakr wastewater project: SC DHEC PHL 43 6.9 GB 21B 2023-02-14 2023-03-28
240000000000000000000000000000000000000019240000000000000000000000000000000
Sequencing of SARS-CoV-2 RNA from wastewater influent samples collected in Pennsylvania for genomic surveillance 97 7.6 GB 20B 2023-06-01 2023-10-17
5500000000000000000000000000000000000000000081202255000000000000000000000000
GenomeTrakr Wastewater Project: Thakur Molecular Epidemiology Laboratory, NC State University 48 10 GB 19B 2022-04-04 2023-06-05
900000000000000000000000000004720112007563910000000000000000000000000000
Berlin Wastewater Raw Sequence Reads, SARS-CoV-2 amplicon sequencing 62 10.6 GB 18B 2021-02-09 2022-01-13
130000000000000071310740044463000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Raw sequence reads 192 1.1 GB 18B 2022-09-22 2023-10-19
8600000000000000000000000000000000030002500406478639000000000000000000000000
GenomeTrakr wastewater project: Penn State 25 7.8 GB 17B 2022-01-10 2022-06-16
800000000000000000000000008405440000000000000000000000000000000000000000
Metagenomics analysis of wastewater influents from wastewater treatment facilities across Ontario 48 7.6 GB 17B 2021-11-29 2022-02-09
260000000000000000000000011826300000000000000000000000000000000000000000000
Wastewater surveillance of SARS-CoV-2 in Victoria, Australia 411 2.8 GB 16B 2021-11-15 2021-12-21
252000000000000000000000001592520000000000000000000000000000000000000000000000
Wastewater Surveillance 17 4.6 GB 15B 2020-11-02 2021-01-25
700000000000764000000000000000000000000000000000000000000000000000000000
Wastewater ARCTIC SARS-Cov-2 sequencing 5 6.3 GB 14B 2020-12-28 2021-01-17
400000000000014000000000000000000000000000000000000000000000000000000000
Pilot sequencing study for wastewater monitoring for SARS-CoV-2 (Biobot Analytics/Ginkgo Bioworks) 30 6.2 GB 14B 2020-12-27 2021-01-19
22000000000000822000000000000000000000000000000000000000000000000000000000
NWSS Wastewater Project: North Carolina State Laboratory of Public Health 87 8.1 GB 13B 2025-07-29 2025-08-22
490000000000000000000000000000000000000000000000000000000000000000000493800
Improved Robustness of SARS-CoV-2 Whole-Genome Sequencing from Wastewater with a Nonselective Virus Concentration Method 94 3.5 GB 13B 2021-10-01 2022-04-12
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Data from SARS-CoV-2 wastewater surveillance of aircraft from China to Denmark 6 7.6 GB 11B 2023-01-12 2023-02-10
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Raw sequence reads obtained from NGS of wastewater samples 79 2.7 GB 10B 2022-08-01 2022-09-29
410000000000000000000000000000000038410000000000000000000000000000000000000
Detection of SARS-CoV-2 with VirCapSeq capture on wastewater metagenomic samples 6 5 GB 10B 2020-03-15 2020-07-14
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Targeted amplicon sequencing of wastewater samples for detecting SARS-CoV-2 variants with high sensitivity and resolution 79 1.8 GB 10B 2021-01-27 2022-02-25
600000000000001100012440026400000000000000000000000000000000000000000000
Detection of SARS-CoV-2 variants and their proportions in wastewater samples by next-generation sequencing in Finland 15 1.9 GB 8B 2021-11-08 2022-02-21
500000000000000000000000435300000000000000000000000000000000000000000000
Danish SARS-CoV-2 wastewater surveillance - pilot 29 5 GB 8B 2023-06-13 2023-06-13
29000000000000000000000000000000000000000000290000000000000000000000000000
Wastewater Project: Rhode Island Department of Health 60 2.4 GB 8B 2022-12-07 2025-02-13
900000000000000000000000000000000000090500232053057300000000057400000000
US National Wastewater Surveillance System (NWSS) wastewater project: Florida Department of Health 22 2.2 GB 8B 2023-12-31 2024-02-20
110000000000000000000000000000000000000000000000001111000000000000000000000
The Impact of Viral Concentration Method on Quantification and Long Amplicon Nanopore Sequencing of SARS-CoV-2 and Noroviruses in Wastewater 63 6.5 GB 8B 2021-11-12 2021-11-14
60000000000000000000000006000000000000000000000000000000000000000000000000
Early Detection of SARS-CoV-2 Variants Using Genomic Surveillance: Insights from Aircraft Wastewater and Nasal Swabs at Kigali International Airport, Rwanda 59 7.2 GB 7B 2023-08-31 2024-05-31
210000000000000000000000000000000000000000000013270211532500000000000000000
Norovirus genotyping in Sydney wastewater 2018-2020 108 3.2 GB 7B 2018-01-01 2020-12-01
303333333333330000000000000000000000000000000000000000000000000000000000
ES SARS-CoV-2 Malawi 175 678.8 MB 7B 2020-11-30 2022-04-12
3100000000000117243211319126424222196000000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance in Shenzhen during the transition from "dynamic COVID-zero" to "opening up" policy 43 1.7 GB 7B 2022-09-22 2023-01-17
200000000000000000000000000000000006002017000000000000000000000000000000000
Genome sequencing of SARS-CoV-2 in wastewater confirm early arrival of omicron at Frankfurt airport but limited spread in Frankfurt city wastewater during November 2021 4 4.8 GB 7B 2021-11-04 2021-11-23
400000000000000000000000400000000000000000000000000000000000000000000000
Coronastep, sequencing Luxembourg wastewater samples 97 2.9 GB 6B 2020-03-30 2021-03-04
4000022003201240185850000000000000000000000000000000000000000000000000000000
WISER_Mock_Community_Data 120 2.7 GB 6B 2022-02-14 2022-03-15
600000000000000000000000000060600000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing of wastewater in Oregon 5 3 GB 6B 2021-03-26 2021-04-04
300000000000000023000000000000000000000000000000000000000000000000000000
SARS-CoV-2 sequencing data, generated at INAB-CERTH, and retrieved from wastewater samples 23 3.6 GB 6B 2020-05-10 2021-06-28
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Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK 340 2.5 GB 6B 2020-03-30 2020-05-12
192000481929600000000000000000000000000000000000000000000000000000000000000000
RBD amplicon sequencing data of SARS-CoV-2 in wastewater 217 3.6 GB 6B 2022-03-16 2023-08-08
15000000000000000000000000000412121512151215121215121212151212600000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: NH Public Health Laboratories 526 1.7 GB 5B 2020-12-01 2025-08-11
63000000000000250000000000000000000000000000000000000000000000503956546362580421300
GenomeTrakr wastewater project: New Jersey Department of Health - Public Health and Environmental Laboratories 54 2 GB 5B 2022-01-18 2022-07-14
160000000000000000000000000506712168000000000000000000000000000000000000000
Diagnostic Microbiology & Infectious Disease Rapid and sensitive detection of Sars-CoV-2 variants in nasopharyngeal swabs and wastewaters 6 2.4 GB 4B None None
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SARS-CoV-2 wastewater surveillance of pooled aircraft and airport samples from Denmark 10 2.8 GB 4B 2023-01-02 2023-02-01
800000000000000000000000000000000000008200000000000000000000000000000000
Wastewater based SARS-CoV-2 genomic surveillance in Ethiopia 79 1.9 GB 4B 2025-07-28 2025-07-28
79000000000000000000000000000000000000000000000000000000000000000000079000
Metagenomic monitoring of SARS-CoV-2 in effluents in Rio de Janeiro. 18 2.4 GB 4B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
Long Amplicon Nanopore Sequencing for Dual-Typing RdRp and VP1 Genes of Norovirus Genogroups I and II in Wastewater 23 3.1 GB 4B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
UTK SARS-CoV-2 Wastewater Surveillance 1 1.3 GB 4B 2020-10-12 2020-10-12
100000000001000000000000000000000000000000000000000000000000000000000000
Olivar wastewater samples 32 938.7 MB 4B 2022-08-08 2022-08-15
16000000000000000000000000000000001600000000000000000000000000000000000000
Wastewater Metagenome 48 1 GB 3B 2025-07-31 2025-08-16
280000000000000000000000000000000000000000000000000000000000000000000202800
GenomeTrakr wastewater project: Data of Limited Quality 10 1.5 GB 3B 2021-11-30 2021-12-21
600000000000000000000000640000000000000000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in Pune city 6 3.5 GB 3B 2021-03-10 2021-03-30
500000000000000050000000000000000000000000000000000000000000000000000000
Whole genome sequences of SARS-CoV-2 from wastewater samples in Arizona 9 687.9 MB 3B 2025-07-30 2025-07-30
900000000000000000000000000000000000000000000000000000000000000000009000
Chronic Shedding of a SARS-CoV-2 Alpha Variant Lineage Q.3/Q.4 in Wastewater 17 978.9 MB 3B 2021-09-21 2023-05-15
300000000000000000000011101011010010000223200000000000000000000000000000
SARS-CoV-2 wastewater genome sequencing for SASEA 49 155.1 MB 3B 2020-12-02 2021-06-23
230000000000001023815110000000000000000000000000000000000000000000000000000
First seen in local wastewater – Novel virus variants observed weeks prior to routine surveillance underscore the potential of wastewater-based epidemiology 53 1.7 GB 3B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Texas Department of State Health Services 12 1.2 GB 2B 2022-01-11 2022-08-02
500000000000000000000000005001230100000000000000000000000000000000000000
Wastewater-based Surveillance in Selangor Malaysia 5 2.3 GB 2B 2023-04-10 2024-04-05
300000000000000000000000000000000000000003000000000002000000000000000000
SARS-CoV-2 sequencing upon wastewater filtration 12 1.2 GB 2B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
COVID-19 Environmental Surveillance in Karachi, Pakistan: Genome sequencing and assembly 115 1.2 GB 2B 2021-01-07 2022-01-20
250000000000000300107121714882520000000000000000000000000000000000000000000000
SARS-CoV-2 Wastewater Surveillance in Norway 2022-2023 8 1 GB 2B 2023-03-27 2023-04-10
400000000000000000000000000000000000000044000000000000000000000000000000
Nanopore sequencing of SARS-CoV-2 VOC B.1.1.7 from Canadian wastewater using tiled amplicons 2 857.5 MB 1B 2021-01-26 2021-01-26
200000000000002000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: ADRDL South Dakota 13 701.1 MB 1B 2022-05-12 2023-04-26
300000000000000000000000000000121111300201000000000000000000000000000000
Tracking SARS-CoV-2 variants in wastewater in San Pedro de la Paz, Chile 9 703.3 MB 1B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000
Wastewater SARS-CoV-2 testing at SHL 163 464.2 MB 1B 2023-08-21 2025-05-19
2000000000000000000000000000000000000000000000261314131510210351371013201184200000
US National Wastewater Surveillance System (NWSS) wastewater project: Pennsylvania Bureau of Labs 2 817.6 MB 1B 2023-07-03 2023-07-05
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Metatranscriptomics reveals SARS-CoV-2 mutations present in wastewater of the Frankfurt metropolitan area in Southern Germany 3 713.4 MB 821M 2020-03-04 2020-03-04
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US National Wastewater Surveillance System (NWSS) wastewater project: Philadelphia Public Health Laboratory 312 435.3 MB 803M 2024-06-26 2025-04-30
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Genomic surveillance of SARS-CoV-2 in wastewater in Gujarat, India 4 429.8 MB 748M 2020-10-22 2021-02-08
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Wastewater2021 9 301.2 MB 744M None None
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SARS-CoV-2 WGS from MO Wastewater Raw sequence reads 1 311.6 MB 622M 2021-05-03 2021-05-03
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SARS-CoV-2 on Environmental Surface 15 378.7 MB 378M 2022-03-04 2022-10-14
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Effects of O2 on accumulation of nitrous and elemental sulfur and microbial community structure in double short-cut sulfur autotrophic denitrification system 7 26.8 MB 323M 2025-08-07 2025-08-07
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UPHC Pathogen Biosurveillance Program 10 69.9 MB 301M 2025-08-15 2025-08-15
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Community-level SARS-CoV-2 sequence diversity revealed by wastewater sampling 30 182.5 MB 225M 2020-06-28 2021-01-31
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SARS-CoV-2 sequencing of university campus wastewater and wastewater treatment plant influent 19 136.2 MB 167M 2020-07-19 2020-09-30
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ONT Sequencing for SARS-CoV-2 in KAUST wastewater 36 114.9 MB 131M 2020-08-12 2022-09-25
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Chlorine disinfectant significantly changed microfauna habitat, community structure, and colonization mode in wastewater treatment plants during the COVID-19 pandemic 2 15.4 MB 79M None None
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US National Wastewater Surveillance System (NWSS) wastewater project: Kansas Health and Environment Laboratory 13 1.8 MB 3M 2025-08-21 2025-08-21
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16S analysis of university dormitory raw wastewater samples, collected during the COVID-19 Pandemic. 173 0 B 0 None None
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Evaluation of sampling methods for genomic surveillance of SARS-CoV-2 variants in aircraft wastewater samples 85 0 B 0 2022-11-03 2023-01-11
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SARS-CoV-2 Wastewater-based Genomic Epidemiology (WGE) in Japan 21 0 B 0 2023-02-01 2023-11-15
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SARS-CoV-2 genome sequencing in influent wastewater and primary sludge 80 0 B 0 2022-04-02 2023-12-17
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Wastewater based genomic surveillance of SARS-CoV-2 throughout Germany 231 0 B 0 None None
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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa, a highly diverged BA.2-related lineage 29 0 B 0 2023-08-22 2023-11-14
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SARS-CoV-2 genome sequencing across Autosampler, COSCa-ball and Torpedo samplers 75 0 B 0 2023-03-14 2023-05-04
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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa 10 0 B 0 None None
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SARS-CoV-2 Whole-Genome Sequencing from Hospital Wastewater 167 0 B 0 2021-05-05 2023-09-27
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SARS-CoV-2 wastewater surveillance in Northern Ireland, 2021-2023 4221 0 B 0 2021-11-15 2023-03-09
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High-resolution and real-time wastewater viral surveillance by Nanopore sequencing 28 0 B 0 2022-10-02 2023-04-16
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Reverse-transcription loop-mediated isothermal amplification and nanopore sequencing (LAMPore) for SARS-CoV-2 wastewater-based surveillance 77 0 B 0 2020-12-22 2020-12-22
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SARS-CoV-2 Wastewater Surveillance in Southern Nevada 1385 0 B 0 2021-09-06 2023-10-30
11400000000000000000000025192767814414191149075727158568972434154142740567443000000000000000000000000

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