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Acknowledgements
Sequence Read Archive SARS-CoV-2 Wastewater Submissions
Last Updated: 2025-12-03
Study Title Submission Metadata Dates Submissions Per Month Since Jan 2020
Total Submissions Sequencing File Sizes Total Bases Sequenced Earliest Submission Most Recent Submission
Wastewater monitoring for SARS-CoV-2 across the United States (CDC/NWSS/Biobot Analytics) 22969 18.5 TB 48T 2022-05-03 2023-09-15
2480000000000000000000000000000029147156223126195235228247220248204239182184217800000000000000000000000000000
Surveillance of SARS-CoV-2 genomic variants in wastewater in Switzerland 8621 5.5 TB 23T 2020-07-09 2024-11-04
3870000000355112742815521118118418619119518820121521118818420719320318414818618715018319038721623722622922521330229831429429811211512810613927688108791600000000000000
SARS-CoV-2 wastewater surveillance (Verily Life Sciences) 12698 2.9 TB 12T 2021-11-29 2025-12-02
5040000000000000000000000097293105168132117117125119114114128139329316440448504503317195320384350314272314324347336317331326318338249202331296274143230262237240274232201600
South Florida - Rapid Acceleration of Diagnostics: Development and Proof-of-Concept Implementation of the South Florida Miami RADx-rad 2128 4.6 TB 9T 2020-09-30 2022-12-20
235000000000122132355667971038883111137905911011523514717181504539332078130000000000000000000000000000000000000
Biobot Analytics Wastewater Monitoring 4190 3.8 TB 9T 2021-11-17 2022-10-05
3500000000000000000000000632353124161812161273000000000000000000000000000000000000000
OHA/OSU wastewater project 4404 2.4 TB 7T 2002-04-12 2025-10-01
2350000000000000000000000000002007338102188235223176931581971182332049918519112777818772332319681591341291204441100923221495871103883000
US National Wastewater Surveillance System (NWSS) wastewater project: Illinois Wastewater Surveillance System (IWSS) 12440 2.3 TB 7T 2021-12-01 2025-01-09
6650000000000000000000000001102454042864224905654646655464164043203873524143593683353383253544124003734333293062082161963121763211816716330000000000000
Wastewater SARS-CoV-2 surveillance at UPHL 12168 1.9 TB 5T 2021-09-23 2025-11-25
34400000000000000000000064571782142162062462332972982492932452322302261622252922502963052013442242692181372673092593052032662373012393026820724223920725726619326427027610024000
Wastewater monitoring of COVID in UK 23536 916.6 GB 5T 2021-10-01 2022-03-12
4.80K00000000000000000000004.07K4.72K3.98K4.80K4.61K1.36K0000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Ohio Department of Health/The Ohio State University Applied Microbiology Services Laboratory 9419 1.6 TB 4T 2021-12-19 2025-01-13
371000000000000000000000000821888364167257219190279278309268279317276272309238215237276277361285275371297341246192142276283363286213283125000000000000
WW_seq_SARS-CoV-2_SLO 614 1.4 TB 3T 2021-02-04 2023-01-31
6600000000000000144332404644506640504320012121212121812601218000000000000000000000000000000000000
Amplicon based sequencing of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) isolated from 16 wastewater catchments in Jefferson County, Kentucky USA over a multi-week period 1040 1.5 TB 3T 2019-10-11 2022-07-18
850000000000000076367856868856868853485656432403124000000000000000000000000000000000000000000
Wastewater SARS-CoV-2 Sequencing 3419 1 TB 3T 2020-07-23 2022-02-09
37800000003191024255612424720827529723819725921421526026737810300000000000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance System (PaWSS) SARS-CoV-2 Monitoring (Biobot Analytics) 1168 1 TB 2T 2023-01-09 2023-02-07
200000000000000000000000000000000000001200000000000000000000000000000000000
Tiled-amplicon sequencing of SARS-CoV-2 from Dutch wastewater samples 17405 605.4 GB 2T 2025-11-10 2025-11-11
17.4K0000000000000000000000000000000000000000000000000000000000000000000000017.4K00
SARS-CoV-2 Colorado wastewater genomic surveillance Raw sequence reads 17367 746.4 GB 2T 2021-03-08 2025-12-02
56500000000000000072401001601511651501441281372292313803613914363574394845113584675555015654845494854004764194693663864644654034504524164282211422041671932312101281611821631581528657112220
pathogen wastewater surveillance (Verily Life Sciences/NWSS) 766 599.6 GB 2T 2025-11-03 2025-12-02
73600000000000000000000000000000000000000000000000000000000000000000000000736300
Wastewater monitoring for SARS-CoV-2 across the United States (HHS Protect/NWSS/Biobot Analytics) 3188 495.8 GB 1T 2021-06-07 2021-08-19
111000000000000000000267211100000000000000000000000000000000000000000000000000000
Wastewater Surveillance for COVID-19 (AquaVitas/NWSS) 1280 624.7 GB 1T 2019-10-23 2021-06-18
60203232951452939232513160230400060000000000000000000000000000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from MO wastewater 13206 309.6 GB 1T 2021-01-06 2025-11-06
399000000000000011432573042623953163782552432902003051621331442942623063992882133082042243142842982631312623212612722472013032602352231481622672802772371731462131841001185968130163130010000
Seasonality of Respiratory, Enteric and Urinary Viruses in Wastewater 576 402.9 GB 1T 2022-01-08 2022-12-31
6000000000000000000000000004748486048486048434536450000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance, Denmark 2021-2023 5348 450.2 GB 672B 2021-10-26 2023-01-24
671000000000000000000000099578539495548671370236331230202177202281233156000000000000000000000000000000000000
Sequencing of SARS-CoV-2 in Wastewater-Washoe County 161 289 GB 617B 2020-11-20 2021-06-20
100000000000101010010000000000000000000000000000000000000000000000000000000
Optimised protocol for monitoring SARS-CoV-2 in wastewater using RC-PCR 1458 184.5 GB 607B 2021-06-10 2022-03-26
1.13K0000000000000000001480000007701.13K0000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Georgia Public Health Laboratory 889 270.4 GB 560B 2023-02-28 2025-07-28
84000000000000000000000000000000000000001161341072241323232201810000000000008084000000
CDC NWSS - SARS-CoV-2 Wastewater Sequencing 2657 206.1 GB 495B 2014-08-01 2025-12-02
1290000000000000000000000000000000000132947425461345347476469567899107117109639810111912911384232877531524847981114108435170
SARS-CoV-2 wastewater surveillance in Arkansas Metagenome 269 262.9 GB 492B 2020-12-28 2024-04-16
120000000000001840306570712897888847771288478884879884888000000000000000000000
Wisconsin wastewater project: Wisconsin State Laboratory of Hygiene 3181 213.8 GB 473B 2022-01-10 2025-11-04
1360000000000000000000000000923312816476341567572818073756651302857759512011213683914148461221151201148110012111782263927336211742200
Wastewater study of severe acute respiratory syndrome coronavirus 2 in Newport Oregon 116 234.6 GB 464B 2020-06-10 2020-12-09
520000005239492730000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 surveillance from North Carolina wastewater 1809 423.7 GB 458B 2022-08-03 2023-07-06
189000000000000000000000000000000001651791741591621281721841571891382000000000000000000000000000000
Implementation of Genomic Wastewater Based Biosurveillance for all Communicable Infectious Diseases 111 230.3 GB 442B 2021-12-05 2022-01-09
730000000000000000000000007338000000000000000000000000000000000000000000000000
SARS-CoV-2 sequencing in Slovak wastewaters 1126 133.6 GB 420B 2022-01-03 2022-08-31
2080000000000000000000000000641291431381499720819800000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 1680 54.4 GB 345B 2020-11-24 2025-02-25
2040000000000020912045225352835797927104128200000164136343237302630382031213337323036934363434363435283336351300000000000
SARS-CoV2 variant analysis in wastewater in six Swedish cities from 2021-2022 355 202.9 GB 329B 2021-11-01 2022-12-26
390000000000000000000000011283224181530241930243938230000000000000000000000000000000000000
Wastewater genomic sequencing for SARS-CoV-2 variants surveillance in wastewater-based epidemiology applications 76 73.2 GB 294B 2022-01-24 2022-08-14
13000000000000000000000000021370011111100000000000000000000000000000000000000000
Data from the Danish SARS-CoV-2 wastewater surveillance 1472 169.8 GB 294B 2023-08-08 2024-08-13
2900000000000000000000000000000000000000000000028929026124018200000461095500000000000000000
Sars-CoV-2 WGS Sequencing from Wastewater samples from Toronto Pearson and Toronto, Ontario 1409 88.4 GB 277B 2018-01-03 2023-09-24
82000000000000000000000000040557074747971787572816382687798810880000000000000000000000000000
GenomeTrakr wastewater project: Nevada State Public Health Laboratory 433 107 GB 276B 2021-09-14 2022-07-16
580000000000000000000001732303047584852544322000000000000000000000000000000000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 652 145.5 GB 270B 2021-12-14 2022-11-29
183000000000000000000000000121839446587265532017161600000000000000000000000000000000000000
Virginia surveillance of SARS-CoV-2 in wastewater 1618 107 GB 254B 2023-01-01 2025-01-02
9600000000000000000000000000000000000009672776872416267636270809183755238498678775421656000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: NYC DOHMH 2056 92.5 GB 226B 2024-03-03 2025-09-30
125000000000000000000000000000000000000000000000000000119125951101251111101098475969811011594971221091060000
SARS-CoV2 variant analysis in Swedish wastewater samples collected in 2023 1138 135.9 GB 222B 2023-05-29 2023-12-25
28300000000000000000000000000000000000000000166288662062832231940000000000000000000000000
Sequencing of SARS-CoV-2 RNA fragments in wastewater detects the spread of new variants during major events 64 61.8 GB 210B 2021-11-12 2023-01-24
29000000000000000000000001129000012000000012000000000000000000000000000000000000
New York State wastewater surveillance program for SARS-CoV-2: NY Department of Health Laboratory 19127 41.9 GB 200B 2022-09-11 2025-11-13
2.34K0000000000000000000000000000000004600362756167861585082574293977886067484479380966081878171864244637971262736100000000002.34K00
US National Wastewater Surveillance System (NWSS) wastewater project: Delaware Public Health Lab 405 106.3 GB 189B 2023-11-29 2025-12-02
116000000000000000000000000000000000000000000000001270241162424385159460000000000000130
Targeted Amplicon and Metagenomic Sequencing from Ontario Wastewater 869 48 GB 184B 2021-10-01 2022-09-18
132000000000000000000000094771113132124129122432630180000000000000000000000000000000000000000
Wastewater metagenomics sequencing for the monitoring of SARS-CoV-2 dynamics in Rotterdam, the Netherlands 695 104.9 GB 181B 1905-07-13 2021-12-06
11600000000018322253309011695937156400760000000000000000000000000000000000000000000000000
A longitudinal study of sequencing SARS-CoV-2 in wastewater samples reveal the variants prevalence 129 115.2 GB 164B 2020-07-31 2022-12-09
14000000016100354111110002148887464840870000000000000000000000000000000000000
A gold standard dataset for lineage abundance estimation from wastewater 252 162.5 GB 160B 2023-04-10 2023-04-27
2520000000000000000000000000000000000000000252000000000000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune' India 1068 50.6 GB 147B 2021-11-01 2023-05-30
13900000000000000000000000367483778785255113966653989121960854800000000000000000000000000000000
Microbiome analysis for wastewater surveillance during COVID-19 17 68.9 GB 146B 2021-02-11 2021-04-21
600000000000000665000000000000000000000000000000000000000000000000000000000
Wastewater-based surveillance and molecular epidemiology of SARS-CoV-2 in northern South Africa 57 17.6 GB 134B 2021-01-18 2022-05-10
13000000000000011047713400373101500000000000000000000000000000000000000000000
Wastewater sequencing of SARS-CoV2 in Liverpool, UK 1341 24.2 GB 131B 2020-11-02 2021-06-21
32200000000000322182217146165109134630000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Health 440 47.7 GB 109B 2021-11-29 2022-10-21
63000000000000000000000008021545562634128473922000000000000000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA (RADx-rad) 994 11 GB 108B 2021-07-19 2022-09-26
104000000000000000000023866873747810461626171685483280000000000000000000000000000000000000000
SARS-CoV-2 Wastewater Sequencing 496 52.8 GB 104B 2020-02-29 2021-03-08
1380026186106102426404044138960000000000000000000000000000000000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: New Jersey Department of Health 1985 67.4 GB 102B 2024-03-27 2025-11-28
116000000000000000000000000000000000000000000000000000111091099511110711111693951151031066883871019096539600
SARS-CoV-2 wastewater whole genome amplicon sequencing 184 30 GB 101B 2020-11-24 2021-10-20
94000000000002010963014209435000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Virginia Division of Consolidated Laboratory Services 79 49.8 GB 99B 2021-11-30 2022-06-29
22000000000000000000000001224141322210000000000000000000000000000000000000000000
Aircraft Wastewater Surveillance - SARS-CoV-2 Monitoring (Ginkgo Bioworks) 25 36.7 GB 96B 2022-08-04 2022-09-08
19000000000000000000000000000000001960000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance: Massachusetts State Public Health Laboratory 334 52.7 GB 93B 2023-06-13 2024-01-16
71000000000000000000000000000000000000000000406571550125833000000000000000000000000
CDC's Traveler-Based Genomic Surveillance Program 29 30.1 GB 90B 2025-11-06 2025-11-27
29000000000000000000000000000000000000000000000000000000000000000000000002900
SARS-CoV-2 surveillance from Wake County, North Carolina wastewater 543 34.7 GB 88B 2022-08-01 2023-06-28
580000000000000000000000000000000058475151485246544544470000000000000000000000000000000
Identifying SARS-CoV-2 VOCs in Brisbane wastewater sample 59 43.9 GB 85B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses 310 6.4 GB 84B 2021-04-06 2022-01-31
5900000000000000001111544159937462616000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Washington State Department of Agriculture 96 45.4 GB 76B 2021-12-17 2022-06-21
210000000000000000000000001018154821200000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Massachusetts Department of Public Health 240 24.8 GB 74B 2022-01-07 2022-03-30
10000000000000000000000000023100000000000000000000000000000000000000000000000
SARS-CoV-2 via wastewater Raw sequence reads 86 26.9 GB 66B 2020-11-30 2021-02-22
2900000000000129282800000000000000000000000000000000000000000000000000000000000
SARS-CoV2 amplicons from wastewater and synthetic 326 18.5 GB 60B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
Environmental samples Raw sequence reads 48 35.1 GB 59B 2020-09-23 2020-09-23
48000000000480000000000000000000000000000000000000000000000000000000000000000
Wastewater metagenome of buildings (RTU) 7 49.9 GB 58B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
Wastewater surveillance of open drains for SARS-CoV-2 lineages : Maharashtra State (India) during June 2022 to May 2023 556 41.5 GB 47B 2022-06-06 2023-05-23
94000000000000000000000000000000134363306987176394864500000000000000000000000000000000
California sewage metatranscriptomes enriched for respiratory viruses 18 27.8 GB 47B 2020-05-13 2020-07-01
900000693000000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: New Mexico State University | Food Safety Laboratory 38 16.5 GB 46B 2022-07-27 2022-11-10
13000000000000000000000000000000031398500000000000000000000000000000000000000
SARS-CoV-2 Raw sequence reads from CA wastewater 192 15.9 GB 42B 2021-08-06 2022-03-02
4700000000000000000000200343535471740000000000000000000000000000000000000000000000
Pennsylvania Wastewater Surveillance - Facility Level SARS-CoV-2 Monitoring (Ginkgo Bioworks) 12 13.3 GB 41B 2022-09-26 2023-05-31
500000000000000000000000000000000012001105200000000000000000000000000000000
CAGABLEA 118 41 GB 41B 2020-10-19 2021-03-23
2200000000001718192221210000000000000000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing 60 15.3 GB 38B 2022-01-17 2022-07-18
110000000000000000000000000691199115000000000000000000000000000000000000000000
Wisconsin wastewater lineage 271 16.4 GB 37B 2022-01-02 2023-03-09
480000000000000000000000000112148271420341719982091130000000000000000000000000000000000
Assessing multiplex tiling PCR sequencing approaches for detecting genomic variants of SARS-CoV-2 in municipal wastewater 106 33.6 GB 36B 2021-02-07 2021-05-14
4600000000000000104546500000000000000000000000000000000000000000000000000000000
Coronavar, sequencing Luxembourg wastewater samples 233 21.7 GB 33B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
Effective Inhibitor Removal from Wastewater Samples Increases Sensitivity of RT-dPCR and Sequencing Analyses and Enhances the Stability of Wastewater-Based Surveillance 36 13.6 GB 32B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
Wastewater sequencing for SARS-CoV-2 59 11.8 GB 31B 2021-01-01 2021-04-27
16000000000000016141514000000000000000000000000000000000000000000000000000000000
Wastewater Surveillance of SARS-CoV-2 in Pune, India (December' 2023 to April'2024) 534 28.7 GB 31B 2023-12-01 2024-04-15
1610000000000000000000000000000000000000000000000001281611188047000000000000000000000
GenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition 77 13.4 GB 30B 2022-01-16 2022-07-13
27000000000000000000000000013113827114000000000000000000000000000000000000000000
Validation study of covid sequencing from wastewater 150 5.7 GB 27B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
A pan-European study of SARS-CoV-2 variants in wastewater under the EU Sewage Sentinel System 54 17.7 GB 27B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
NYC Wastewater Raw Sequence Reads 311 7.9 GB 27B 2021-01-31 2022-03-21
4600000000000001215184259429233346162821100000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: TGen North 229 13.3 GB 25B 2021-10-04 2023-03-23
4900000000000000000000003049284824000018201275870000000000000000000000000000000000
severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) surveillance in wastewater samples in the USA 92 13.8 GB 24B 2020-04-07 2020-06-16
4300001243360000000000000000000000000000000000000000000000000000000000000000000
Monitoring SARS-CoV-2 in Houston wastewater 256 14.1 GB 24B 2021-04-19 2021-11-29
380000000000000000380000003800000000000000000000000000000000000000000000000000
Genome Trakr wastewater project: NJDA 121 7.7 GB 24B 2022-01-11 2022-07-15
21000000000000000000000000019211914141915000000000000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in on-campus STP : INDIA 191 14.9 GB 23B 2021-11-08 2024-04-25
22000000000000000000000004798641544532105856531337810202222000000000000000000000
"SARS-CoV-2 infection dynamics and genomic surveillance to detect variants in wastewater a longitudinal study in Bengaluru, India" 303 4.6 GB 21B 2022-01-03 2022-06-27
12600000000000000000000000001265291834640000000000000000000000000000000000000000000
GenomeTrakr wastewater project: SC DHEC PHL 43 6.9 GB 21B 2023-02-14 2023-03-28
240000000000000000000000000000000000000019240000000000000000000000000000000000
Sequencing of SARS-CoV-2 RNA from wastewater influent samples collected in Pennsylvania for genomic surveillance 97 7.6 GB 20B 2023-06-01 2023-10-17
5500000000000000000000000000000000000000000081202255000000000000000000000000000
GenomeTrakr Wastewater Project: Thakur Molecular Epidemiology Laboratory, NC State University 48 10 GB 19B 2022-04-04 2023-06-05
900000000000000000000000000004720112007563910000000000000000000000000000000
Berlin Wastewater Raw Sequence Reads, SARS-CoV-2 amplicon sequencing 62 10.6 GB 18B 2021-02-09 2022-01-13
130000000000000071310740044463000000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Raw sequence reads 192 1.1 GB 18B 2022-09-22 2023-10-19
8600000000000000000000000000000000030002500406478639000000000000000000000000000
Wastewater-based Surveillance in Selangor Malaysia 40 25.6 GB 18B 2023-04-10 2025-12-01
240000000000000000000000000000000000000000300000000000200000000000000000011240
GenomeTrakr wastewater project: Penn State 25 7.8 GB 17B 2022-01-10 2022-06-16
800000000000000000000000008405440000000000000000000000000000000000000000000
Metagenomics analysis of wastewater influents from wastewater treatment facilities across Ontario 48 7.6 GB 17B 2021-11-29 2022-02-09
260000000000000000000000011826300000000000000000000000000000000000000000000000
Wastewater surveillance of SARS-CoV-2 in Victoria, Australia 411 2.8 GB 16B 2021-11-15 2021-12-21
252000000000000000000000001592520000000000000000000000000000000000000000000000000
Wastewater Surveillance 17 4.6 GB 15B 2020-11-02 2021-01-25
700000000000764000000000000000000000000000000000000000000000000000000000000
Wastewater ARCTIC SARS-Cov-2 sequencing 5 6.3 GB 14B 2020-12-28 2021-01-17
400000000000014000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 Raw sequence reads 21 21 GB 14B 2025-11-28 2025-12-02
20000000000000000000000000000000000000000000000000000000000000000000000002010
Pilot sequencing study for wastewater monitoring for SARS-CoV-2 (Biobot Analytics/Ginkgo Bioworks) 30 6.2 GB 14B 2020-12-27 2021-01-19
22000000000000822000000000000000000000000000000000000000000000000000000000000
Improved Robustness of SARS-CoV-2 Whole-Genome Sequencing from Wastewater with a Nonselective Virus Concentration Method 94 3.5 GB 13B 2021-10-01 2022-04-12
2000000000000000000000001811121213208000000000000000000000000000000000000000000000
Data from SARS-CoV-2 wastewater surveillance of aircraft from China to Denmark 6 7.6 GB 11B 2023-01-12 2023-02-10
400000000000000000000000000000000000004200000000000000000000000000000000000
Raw sequence reads obtained from NGS of wastewater samples 79 2.7 GB 10B 2022-08-01 2022-09-29
410000000000000000000000000000000038410000000000000000000000000000000000000000
Detection of SARS-CoV-2 with VirCapSeq capture on wastewater metagenomic samples 6 5 GB 10B 2020-03-15 2020-07-14
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Targeted amplicon sequencing of wastewater samples for detecting SARS-CoV-2 variants with high sensitivity and resolution 79 1.8 GB 10B 2021-01-27 2022-02-25
600000000000001100012440026400000000000000000000000000000000000000000000000
Detection of SARS-CoV-2 variants and their proportions in wastewater samples by next-generation sequencing in Finland 15 1.9 GB 8B 2021-11-08 2022-02-21
500000000000000000000000435300000000000000000000000000000000000000000000000
Danish SARS-CoV-2 wastewater surveillance - pilot 29 5 GB 8B 2023-06-13 2023-06-13
29000000000000000000000000000000000000000000290000000000000000000000000000000
Wastewater Project: Rhode Island Department of Health 60 2.4 GB 8B 2022-12-07 2025-02-13
900000000000000000000000000000000000090500232053057300000000057400000000000
US National Wastewater Surveillance System (NWSS) wastewater project: Florida Department of Health 22 2.2 GB 8B 2023-12-31 2024-02-20
110000000000000000000000000000000000000000000000001111000000000000000000000000
The Impact of Viral Concentration Method on Quantification and Long Amplicon Nanopore Sequencing of SARS-CoV-2 and Noroviruses in Wastewater 63 6.5 GB 8B 2021-11-12 2021-11-14
60000000000000000000000006000000000000000000000000000000000000000000000000000
Early Detection of SARS-CoV-2 Variants Using Genomic Surveillance: Insights from Aircraft Wastewater and Nasal Swabs at Kigali International Airport, Rwanda 59 7.2 GB 7B 2023-08-31 2024-05-31
210000000000000000000000000000000000000000000013270211532500000000000000000000
Norovirus genotyping in Sydney wastewater 2018-2020 108 3.2 GB 7B 2018-01-01 2020-12-01
303333333333330000000000000000000000000000000000000000000000000000000000000
ES SARS-CoV-2 Malawi 175 678.8 MB 7B 2020-11-30 2022-04-12
3100000000000117243211319126424222196000000000000000000000000000000000000000000000
Metagenomes of SARS-CoV-2 in wastewater samples from a city in arid Patagonia 2 1.3 GB 7B 2025-12-01 2025-12-01
200000000000000000000000000000000000000000000000000000000000000000000000020
SARS-CoV-2 wastewater surveillance in Shenzhen during the transition from "dynamic COVID-zero" to "opening up" policy 43 1.7 GB 7B 2022-09-22 2023-01-17
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Genome sequencing of SARS-CoV-2 in wastewater confirm early arrival of omicron at Frankfurt airport but limited spread in Frankfurt city wastewater during November 2021 4 4.8 GB 7B 2021-11-04 2021-11-23
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Coronastep, sequencing Luxembourg wastewater samples 97 2.9 GB 6B 2020-03-30 2021-03-04
4000022003201240185850000000000000000000000000000000000000000000000000000000000
WISER_Mock_Community_Data 120 2.7 GB 6B 2022-02-14 2022-03-15
600000000000000000000000000060600000000000000000000000000000000000000000000000
Severe acute respiratory syndrome coronavirus 2 Genome sequencing of wastewater in Oregon 5 3 GB 6B 2021-03-26 2021-04-04
300000000000000023000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 sequencing data, generated at INAB-CERTH, and retrieved from wastewater samples 23 3.6 GB 6B 2020-05-10 2021-06-28
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Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK 340 2.5 GB 6B 2020-03-30 2020-05-12
192000481929600000000000000000000000000000000000000000000000000000000000000000000
RBD amplicon sequencing data of SARS-CoV-2 in wastewater 217 3.6 GB 6B 2022-03-16 2023-08-08
15000000000000000000000000000412121512151215121215121212151212600000000000000000000000000000
US National Wastewater Surveillance System (NWSS) wastewater project: NH Public Health Laboratories 728 1.7 GB 5B 2020-12-01 2025-11-24
69000000000000250000039140000000000000000000000000000000000000005039565463625825415369146600
GenomeTrakr wastewater project: New Jersey Department of Health - Public Health and Environmental Laboratories 54 2 GB 5B 2022-01-18 2022-07-14
160000000000000000000000000506712168000000000000000000000000000000000000000000
Deep Mutational Scanning NJ-RBM 18 1.1 GB 4B 2025-11-17 2025-11-17
18000000000000000000000000000000000000000000000000000000000000000000000001800
Diagnostic Microbiology & Infectious Disease Rapid and sensitive detection of Sars-CoV-2 variants in nasopharyngeal swabs and wastewaters 6 2.4 GB 4B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
SARS-CoV-2 wastewater surveillance of pooled aircraft and airport samples from Denmark 10 2.8 GB 4B 2023-01-02 2023-02-01
800000000000000000000000000000000000008200000000000000000000000000000000000
Metagenomic monitoring of SARS-CoV-2 in effluents in Rio de Janeiro. 18 2.4 GB 4B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
Long Amplicon Nanopore Sequencing for Dual-Typing RdRp and VP1 Genes of Norovirus Genogroups I and II in Wastewater 23 3.1 GB 4B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
UTK SARS-CoV-2 Wastewater Surveillance 1 1.3 GB 4B 2020-10-12 2020-10-12
100000000001000000000000000000000000000000000000000000000000000000000000000
Olivar wastewater samples 32 938.7 MB 4B 2022-08-08 2022-08-15
16000000000000000000000000000000001600000000000000000000000000000000000000000
GenomeTrakr wastewater project: Data of Limited Quality 10 1.5 GB 3B 2021-11-30 2021-12-21
600000000000000000000000640000000000000000000000000000000000000000000000000
2019-nCoV (SARS-CoV-2) Wastewater Surveillance in Pune city 6 3.5 GB 3B 2021-03-10 2021-03-30
500000000000000050000000000000000000000000000000000000000000000000000000000
Chronic Shedding of a SARS-CoV-2 Alpha Variant Lineage Q.3/Q.4 in Wastewater 17 978.9 MB 3B 2021-09-21 2023-05-15
300000000000000000000011101011010010000223200000000000000000000000000000000
SARS-CoV-2 wastewater genome sequencing for SASEA 49 155.1 MB 3B 2020-12-02 2021-06-23
230000000000001023815110000000000000000000000000000000000000000000000000000000
First seen in local wastewater – Novel virus variants observed weeks prior to routine surveillance underscore the potential of wastewater-based epidemiology 53 1.7 GB 3B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: Texas Department of State Health Services 12 1.2 GB 2B 2022-01-11 2022-08-02
500000000000000000000000005001230100000000000000000000000000000000000000000
SARS-CoV-2 sequencing upon wastewater filtration 12 1.2 GB 2B None None
5-50000000000000000000000000000000000000000000000000000000000000000000000000
Wastewater Metagenome 34 674.6 MB 2B 2025-11-05 2025-11-05
34000000000000000000000000000000000000000000000000000000000000000000000003400
COVID-19 Environmental Surveillance in Karachi, Pakistan: Genome sequencing and assembly 115 1.2 GB 2B 2021-01-07 2022-01-20
250000000000000300107121714882520000000000000000000000000000000000000000000000000
SARS-CoV-2 Wastewater Surveillance in Norway 2022-2023 8 1 GB 2B 2023-03-27 2023-04-10
400000000000000000000000000000000000000044000000000000000000000000000000000
Nanopore sequencing of SARS-CoV-2 VOC B.1.1.7 from Canadian wastewater using tiled amplicons 2 857.5 MB 1B 2021-01-26 2021-01-26
200000000000002000000000000000000000000000000000000000000000000000000000000
GenomeTrakr wastewater project: ADRDL South Dakota 13 701.1 MB 1B 2022-05-12 2023-04-26
300000000000000000000000000000121111300201000000000000000000000000000000000
Tracking SARS-CoV-2 variants in wastewater in San Pedro de la Paz, Chile 9 703.3 MB 1B None None
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Wastewater SARS-CoV-2 testing at SHL 163 464.2 MB 1B 2023-08-21 2025-05-19
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US National Wastewater Surveillance System (NWSS) wastewater project: Pennsylvania Bureau of Labs 2 817.6 MB 1B 2023-07-03 2023-07-05
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Metatranscriptomics reveals SARS-CoV-2 mutations present in wastewater of the Frankfurt metropolitan area in Southern Germany 3 713.4 MB 821M 2020-03-04 2020-03-04
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US National Wastewater Surveillance System (NWSS) wastewater project: Philadelphia Public Health Laboratory 324 435.3 MB 803M 2024-06-26 2025-08-06
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Genomic surveillance of SARS-CoV-2 in wastewater in Gujarat, India 4 429.8 MB 748M 2020-10-22 2021-02-08
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Wastewater2021 9 301.2 MB 744M None None
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SARS-CoV-2 WGS from MO Wastewater Raw sequence reads 1 311.6 MB 622M 2021-05-03 2021-05-03
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SCV2 retrospective sequencing 6 199.2 MB 493M 2025-12-02 2025-12-02
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SARS-CoV-2 on Environmental Surface 15 378.7 MB 378M 2022-03-04 2022-10-14
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Community-level SARS-CoV-2 sequence diversity revealed by wastewater sampling 30 182.5 MB 225M 2020-06-28 2021-01-31
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SARS-CoV-2 sequencing of university campus wastewater and wastewater treatment plant influent 19 136.2 MB 167M 2020-07-19 2020-09-30
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ONT Sequencing for SARS-CoV-2 in KAUST wastewater 36 114.9 MB 131M 2020-08-12 2022-09-25
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Chlorine disinfectant significantly changed microfauna habitat, community structure, and colonization mode in wastewater treatment plants during the COVID-19 pandemic 2 15.4 MB 79M None None
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US National Wastewater Surveillance System (NWSS) wastewater project: Kansas Health and Environment Laboratory 452 930.8 kB 5M 2023-11-27 2025-11-18
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16S analysis of university dormitory raw wastewater samples, collected during the COVID-19 Pandemic. 173 0 B 0 None None
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SARS-CoV-2 wastewater surveillance in Northern Ireland, 2021-2023 4221 0 B 0 2021-11-15 2023-03-09
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SARS-CoV-2 wastewater sequencing data 116 0 B 0 2024-01-02 2025-05-14
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Wastewater based genomic surveillance of SARS-CoV-2 throughout Germany 231 0 B 0 2023-01-02 2023-04-30
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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa 10 0 B 0 2023-09-20 2023-12-12
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SARS-CoV-2 Wastewater Surveillance in Southern Nevada 1385 0 B 0 2021-09-06 2023-10-30
11400000000000000000000025192767814414191149075727158568972434154142740567443000000000000000000000000000
SARS-CoV-2 genome sequencing across Autosampler, COSCa-ball and Torpedo samplers 75 0 B 0 2023-03-14 2023-05-04
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Emergence of the BA.2.87.1 lineage of SARS-CoV-2 in South Africa, a highly diverged BA.2-related lineage 29 0 B 0 2023-08-22 2023-11-14
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SARS-CoV-2 Whole-Genome Sequencing from Hospital Wastewater 167 0 B 0 2021-05-05 2023-09-27
2200000000000000000744660110165541973037111322620001230000000000000000000000000000
SARS-CoV-2 genome sequencing in influent wastewater and primary sludge 80 0 B 0 2022-04-02 2023-12-17
2300000000000000000000000000002300000000000000001824160000000000000000000000000
SARS-CoV-2 Wastewater-based Genomic Epidemiology (WGE) in Japan 21 0 B 0 2023-02-01 2023-11-15
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Wastewater Raw sequence reads for SARS-CoV-2 946 0 B 0 2021-12-16 2024-04-06
19400000000000000000000000018003830751165910213401945213277068000000000022000000000000000000000
Wastewater based SARS-CoV-2 genomic surveillance in Ethiopia 79 0 B 0 2023-02-23 2023-08-17
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Identification of SARS-CoV-2 variants by MiSeq sequencing in sewers using passive sampling. 49 0 B 0 2022-02-15 2022-05-22
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Systematic evaluation of tangential-flow ultrafiltration and Nanotrap microbiome particles for sequencing wastewater RNA virome 110 0 B 0 2022-02-15 2023-04-06
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High-resolution and real-time wastewater viral surveillance by Nanopore sequencing 28 0 B 0 2022-10-02 2023-04-16
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Whole genome sequences of SARS-CoV-2 from wastewater samples in Arizona 9 0 B 0 2022-10-11 2023-02-06
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Reverse-transcription loop-mediated isothermal amplification and nanopore sequencing (LAMPore) for SARS-CoV-2 wastewater-based surveillance 77 0 B 0 2020-12-22 2020-12-22
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Evaluation of sampling methods for genomic surveillance of SARS-CoV-2 variants in aircraft wastewater samples 85 0 B 0 2022-11-03 2023-01-11
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DISCLAIMER: The raw data published on this dashboard has been obtained from deidentified and aggregated materials collected in accordance with the law and ethical guidelines governing the research studies. This data is made available for informational purposes only. This data set has not been independently verified, validated, or peer reviewed. It may contain errors, omissions, or artifacts inherent to the methods used in data collection and processing and is provided as is without any warranty of accuracy or completeness.

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